Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0684 ATGGCTTCCAACAAAGCCCTTGCAACCATTTTTGTGCTATCTCTCCTTTCCTACTCAACATTCACCGGTGCTTGTGGTTCATGCAACCCAGTGCCGGTGCCAACGCCTCGCACCCCAAAGATCGAGCGTTGCCCCACGGACACGTTGAAACTAGGGGTGTGCGCCGACGTTCTTGGACTTGTTAACGTTGTTATTGGAACTCCTCTTTCGAGCAAGTGTTGTGCATTGATCGATGGTCTGGTGGATTTGGAAGCTGCCCTTTGCCTTTGCACTGCTATTAAGGCCAACGTGCTTGGAATCAACTTGAATGTCCCCATCGCCCTCAGCTTAATCCTTAGTGCTTGTCAAAAAACTGTTCCTCCTGGTTTCCAATGTCCGTAG 381 0.5013 MASNKALATIFVLSLLSYSTFTGACGSCNPVPVPTPRTPKIERCPTDTLKLGVCADVLGLVNVVIGTPLSSKCCALIDGLVDLEAALCLCTAIKANVLGINLNVPIALSLILSACQKTVPPGFQCP 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0684 126 FunFam pEARLI1-like lipid transfer protein 1 42 126 - -
Glsi10g0684 126 SMART aai_6 44 125 IPR016140 -
Glsi10g0684 126 Pfam Hydrophobic seed protein 43 126 IPR027923 -
Glsi10g0684 126 PANTHER - 7 125 - -
Glsi10g0684 126 CDD HPS_like 43 125 IPR027923 -
Glsi10g0684 126 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Glsi10g0684 126 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 47 126 IPR036312 -
Glsi10g0684 126 Gene3D - 42 126 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0684 Glsi-ChrGlsi10 4378117 4378497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0684 34 126 Acyl Lipid Metabolism Gene Families AT4G22490 39.785 8.44e-18 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0684 10 4378117 4378497 Glsi08g1609 08 11471261 11471713 CCT
Glsi10g0684 10 4378117 4378497 Glsi10g0684 10 4378117 4378497 ECH