Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1609 ATGCTTCATTTCCCCGGTCCTTCCCATTCCACATCGATCAAATTAAGCATGGCTTCCAGCAAGCGGATCTGTGCCATCATTCTAGTGCTCTCCCTCCTTGCTTACTCAACCTTCACCGACGCTTGTGGTTCATGCAAGCCCCCGGCGCCAAAGCCTAAACCCAAACCCACGCCAAAGCCATGTCCTACTCCTCAATATTACTGCCCCAAGGACACGTTGAAGCTAGGGGTCTGTGCTGACGTTCTTGGGCTCGTAAACGTCGTTGTTGGGTCTCCTTCTTCAAGCAAGTGTTGCGCGTTGCTCGCTGGTTTGGCCGATGCAGAGGCAGCACTTTGCCTTTGCACTGCTATTAAGGCCAATGTGCTTGGGATCAACTTGAACGTACCCGTCACCCTCAGCTGTCTCCTCAGTGCTTGTGGAAAAACAGTTCCTACTGGTTTCCAATGTCCATAG 453 0.521 MLHFPGPSHSTSIKLSMASSKRICAIILVLSLLAYSTFTDACGSCKPPAPKPKPKPTPKPCPTPQYYCPKDTLKLGVCADVLGLVNVVVGSPSSSKCCALLAGLADAEAALCLCTAIKANVLGINLNVPVTLSCLLSACGKTVPTGFQCP 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1609 150 CDD HPS_like 68 149 IPR027923 -
Glsi08g1609 150 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 71 150 IPR036312 -
Glsi08g1609 150 PANTHER - 23 149 - -
Glsi08g1609 150 SMART aai_6 68 149 IPR016140 -
Glsi08g1609 150 Gene3D - 65 150 IPR036312 -
Glsi08g1609 150 FunFam pEARLI1-like lipid transfer protein 1 66 150 - -
Glsi08g1609 150 Pfam Hydrophobic seed protein 68 150 IPR027923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1609 Glsi-ChrGlsi08 11471261 11471713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1609 60 150 Acyl Lipid Metabolism Gene Families AT4G22490 41.304 9.02e-18 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0684 10 4378117 4378497 Glsi08g1609 08 11471261 11471713 CCT
Glsi08g1609 08 11471261 11471713 Glsi08g1609 08 11471261 11471713 ECH