Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0630 ATGAAGTTTATGAAGTTGGGTTCAAAGCCTGATGCTTTTCAAGCTGATGGAAAGTCTGTCAGGTATGTGTCAACTGAATTGGCCACTGATGTGATCATTAATGTCGGTGAAGTGAAGTTCTACCTTCACAAGTTTCCTCTACTGTCTAAAAGCAATCGACTGCAAAATCTGGTATCCAAAGCTAATGAAGAGAACTCTGATGAAATTTACATGGCTGATTTCCCTGGAGGGCCTAAAGCCTTTGAAATATGTGCGAAATTCTGTTATGGAATAACTGTTACTCTTAATGCTTACAATGTTGTGGCTGCCCGTTGTGCAGCTGAGTACCTTGAGATGAATGAAGACATTGATAGAGGAAACTTAATTTTTAAAATTGATGTGTTTCTAAACTCATGTATCTTCTGTAGCTGGAAAGATTCCATAAATGTTCTCCAAACTACTAAATCTCTGTTGCCATGGTCTGAGGATCTGAAGATCATTGGAAGATGCATAGATTCCATAGCTTCTAAAACTTCTGTGAACCCAGCAAACATCATGTGGTCTTACACATATAACCGGAAAATAACAGAGCCTGATAAAATTATTGAGGACCATATGACGTTTCAAGAGAAAATTGAGTCTGTTCCTAAGGATTGGTGGGTTGAAGACGTATGTGAGCTGGACATTGATCTTTACAAACAAGTCATGATAGCTGTGAAATCAAAGGGAAGAATGGATGGTGTTGTAATTGCTGAGGCACTAAAAATTTATGCATTCAGATGGTTGCCTGATTCTGTTGATGCATTGGTTTCTGATGCCCATGCTCGGAAGAACAAATCTTTGGTAGAAACAATTGTCTGCTTGTTGCCATCTGACTGTGGTTTGGGCTGTTCATGTAGTTTTTTGCTGAAACTATTAAAAGTGGCCATATTAGTTGGAGCTGATGAGTCATCCAAAGAAGAATTGATGAAGAGCGTCAGCCTGAAATTGCATGAAGCTTCTGTTAAGGATTTACTGATCCCTGCAAGGTCCCGCCAGACTTCCACATATGATGTTGCATTGGTACAATGTCTTTTGAATCGTTACATGACTTACGAAAGGGGCAGCTGTGATGTTGAAGATTTTGAGGAGAAAGATAAAGGAATTGATAAATCTGTCTTAAGGCATAGCTCCTTAATGAATGTTGGCAAGTTGGTGGATTGTTATCTGGCTGAAATTTCACATGATCCAAATCTCAGCCTCTCTAGTTTTGTTGACTTGTCACAGTCAATTCCAGAGTTTGCTAGACCAAACCATGATGGTCTCTACAGAGCTATTGATATCTACTTGAAGGAGCATCCGAATTTAACAAAAGCGGAAAGGAAGACAGTAAGTGGACTGATGGATGTCAAGAAATTGACAGTGGGTGCATCTATGCATGCTGCACAGAATGAGCGCCTTCCACTTCGAGTTGTAGTGCAGGTTCTCTTTTACGAGCAGGTTAGAGCTTCTGCCGGTGTTCGAGCTCCTGGTAACAGTCCATGTGATCCTGCGCACTCTGTTACGAGTGCAGATGACGATTGTGAGAAAACAGAGGGAGAAAATTGCCGGTCTCTTAAAAGCCAGATGAGTCATTTGAGTATCAAAGATGAAGAGTTCCGTAAGAACAGGAAATTGAGTAAGGGGAATAGCAAATACTTTAAAAGTGGCATGCAACTGCTGCCGTCTCGATCAAGGAGAATCTTTGATAGGTTATGGATTGTGGGTAAAGGACAAGGAGAGAATAGGAGCTCCGACACTTCACGGAGTTCTAATAGCCCAACTTCTGTTGTCCCTATAGATACCAAATCATCTGGTTCTTCCTCAAGACAAAGGAGGCATTCTGTCTCTTAG 1851 0.409 MKFMKLGSKPDAFQADGKSVRYVSTELATDVIINVGEVKFYLHKFPLLSKSNRLQNLVSKANEENSDEIYMADFPGGPKAFEICAKFCYGITVTLNAYNVVAARCAAEYLEMNEDIDRGNLIFKIDVFLNSCIFCSWKDSINVLQTTKSLLPWSEDLKIIGRCIDSIASKTSVNPANIMWSYTYNRKITEPDKIIEDHMTFQEKIESVPKDWWVEDVCELDIDLYKQVMIAVKSKGRMDGVVIAEALKIYAFRWLPDSVDALVSDAHARKNKSLVETIVCLLPSDCGLGCSCSFLLKLLKVAILVGADESSKEELMKSVSLKLHEASVKDLLIPARSRQTSTYDVALVQCLLNRYMTYERGSCDVEDFEEKDKGIDKSVLRHSSLMNVGKLVDCYLAEISHDPNLSLSSFVDLSQSIPEFARPNHDGLYRAIDIYLKEHPNLTKAERKTVSGLMDVKKLTVGASMHAAQNERLPLRVVVQVLFYEQVRASAGVRAPGNSPCDPAHSVTSADDDCEKTEGENCRSLKSQMSHLSIKDEEFRKNRKLSKGNSKYFKSGMQLLPSRSRRIFDRLWIVGKGQGENRSSDTSRSSNSPTSVVPIDTKSSGSSSRQRRHSVS 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0630 616 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Glsi10g0630 616 MobiDBLite consensus disorder prediction 577 616 - -
Glsi10g0630 616 PANTHER OS12G0117600 PROTEIN 23 581 IPR043454 -
Glsi10g0630 616 MobiDBLite consensus disorder prediction 494 514 - -
Glsi10g0630 616 Pfam NPH3 family 211 463 IPR027356 -
Glsi10g0630 616 MobiDBLite consensus disorder prediction 579 616 - -
Glsi10g0630 616 FunFam BTB/POZ domain-containing protein NPY2 17 121 - -
Glsi10g0630 616 Gene3D Potassium Channel Kv1.1; Chain A 17 118 IPR011333 -
Glsi10g0630 616 SMART BTB_4 29 127 IPR000210 GO:0005515
Glsi10g0630 616 Pfam BTB/POZ domain 27 116 IPR000210 GO:0005515
Glsi10g0630 616 SUPERFAMILY POZ domain 22 114 IPR011333 -
Glsi10g0630 616 ProSiteProfiles NPH3 domain profile. 211 488 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0630 Glsi-ChrGlsi10 3958250 3962547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0630 22 508 EF-hand Containing Proteins AT3G44820 31.977 1.57e-85 278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0630 10 3958250 3962547 Glsi08g1659 08 11835242 11838643 CCT
Glsi10g0630 10 3958250 3962547 Glsi10g0630 10 3958250 3962547 ECH