Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0464 ATGAAGGAAGACGCAGCAGATCGAAAACAAGAAGATTCATGGCCCTCGACAAACGCACCCAATCAGGGGAAAGCCGAACAAGCCGAACAAGATATGAAGCTTTGGGCAGTCTTCCTCTTCGGCTTGATTGGCGCCACTGCCACCACGTTCGCCGTTGGTCGGCTGCGGAGGACTGTTGATTGGTTCTATGCTCAGCTGTCCAGGTCTCAATCCTCATGGAAAGAAGGACCGGGCAGTTCATTCCGATCAGCTTTTCAGGAAGAAGCGTGGAAAAGGTACAATAAGCGACTGCAAGAGGAGTATGAAGAGGAGATGGAGAGAGTGGAACGAATAAGGCGTATGCAAAGTGTGTTTAACCGAGAAAGAAACAAGTACAAAAGAAGTTATGACAGCTGGAGGGAAAATGGTCCCGGTGCATATCATCAACATTTCCAGAGAGACGATTGGTATTGGAAGACTGATACATCCTACAGAGATTGGAGGACTAATTATAGAGAAACACCTAGAGAGACCGGAAGCTATTCATTATCACATCACTACTCTGTTTTGGGTCTTGACAGGTTTAGAACAACGCCATATACAGATGCAGAGATTAAGACAGCATTTAGGACCAAGGCAAAGGAGTATCATCCTGATCAGAACCAGGATAATAGAGTGGTTGCAGAGGCCAAGTTTAAAGAGGTGATGAATTCCTACGAGGCCATAAAACAAGAAAGAAAGAACCAGAATCTGTAA 735 0.4558 MKEDAADRKQEDSWPSTNAPNQGKAEQAEQDMKLWAVFLFGLIGATATTFAVGRLRRTVDWFYAQLSRSQSSWKEGPGSSFRSAFQEEAWKRYNKRLQEEYEEEMERVERIRRMQSVFNRERNKYKRSYDSWRENGPGAYHQHFQRDDWYWKTDTSYRDWRTNYRETPRETGSYSLSHHYSVLGLDRFRTTPYTDAEIKTAFRTKAKEYHPDQNQDNRVVAEAKFKEVMNSYEAIKQERKNQNL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0464 244 ProSiteProfiles dnaJ domain profile. 178 240 IPR001623 -
Glsi10g0464 244 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 242 - -
Glsi10g0464 244 MobiDBLite consensus disorder prediction 1 26 - -
Glsi10g0464 244 Pfam DnaJ domain 179 242 IPR001623 -
Glsi10g0464 244 Gene3D DnaJ domain 169 244 IPR036869 -
Glsi10g0464 244 CDD DnaJ 179 233 IPR001623 -
Glsi10g0464 244 SMART dnaj_3 177 240 IPR001623 -
Glsi10g0464 244 PRINTS DnaJ domain signature 220 240 IPR001623 -
Glsi10g0464 244 PRINTS DnaJ domain signature 202 217 IPR001623 -
Glsi10g0464 244 Coils Coil 87 114 - -
Glsi10g0464 244 SUPERFAMILY Chaperone J-domain 176 242 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0464 Glsi-ChrGlsi10 2968796 2972091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0464 130 243 Miscellaneous Gene Families AT5G49580 35.652 1.54e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0464 10 2968796 2972091 Glsi08g1782 08 12663585 12670590 CCT
Glsi10g0464 10 2968796 2972091 Glsi10g0464 10 2968796 2972091 ECH