Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1782 ATGAAGAACGACGGGGCTGATCGCAATCGAGATCATCCTTGGTCGTCAACAAACGAACCCTATAAGGGGGATAGTAAGCTTTGGGGAGTTTTTCTCTTTGGTTTAATTGGCGCCACCGCCACTACCTTCGCCGTTGGTCAGTTGCGGAGGAATGTTGATTGGTTTTATGCACAGATGTCCAGGTCACGGTCATCATGGAAAGGAGGGACTGGCAATTCTTTCCGATCATCTTCTCAGGAAGAAGCATGGAAAAGATACAATAAGCGACTGCAAGAAGAATACGAGGAGGAGATGGAAAGAGTGGAACGTATAAGGCGTATGCAAAGTGTGTTTAACAGAGAAAGGAATAAGCACAAACGAAGTTACGAAAGCTGGAGGGAAAATGGTCCTGGTGCCTATCATCAGCATTTCCAGAGAGATGATTGGTATTGGAAGGCAGATACATCCTTTAGAGATCGCAGGACTAATTATCGAGAAACTCCTAGAGAGAGTGGAAACTATTTGTTATCACATCACTACTCAATTTTGGGTCTTGACAGGTTTAGAACAGCGCCATACACAGATGCTGAGATTAAGACAGCATTTCGAACCAAGGCAAAGGAGTATCATCCTGATCAGAATCAGGATAATAGAGAGGCTGCTGAGGCCAAGTTCAAAGAGGTGATGAATTCGTACGAGGCCATAAAACAAGAAAGAACGAACCAGAATGTGTGA 714 0.444 MKNDGADRNRDHPWSSTNEPYKGDSKLWGVFLFGLIGATATTFAVGQLRRNVDWFYAQMSRSRSSWKGGTGNSFRSSSQEEAWKRYNKRLQEEYEEEMERVERIRRMQSVFNRERNKHKRSYESWRENGPGAYHQHFQRDDWYWKADTSFRDRRTNYRETPRESGNYLLSHHYSILGLDRFRTAPYTDAEIKTAFRTKAKEYHPDQNQDNREAAEAKFKEVMNSYEAIKQERTNQNV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1782 237 SMART dnaj_3 170 233 IPR001623 -
Glsi08g1782 237 SUPERFAMILY Chaperone J-domain 171 233 IPR036869 -
Glsi08g1782 237 Coils Coil 80 107 - -
Glsi08g1782 237 PRINTS DnaJ domain signature 195 210 IPR001623 -
Glsi08g1782 237 PRINTS DnaJ domain signature 213 233 IPR001623 -
Glsi08g1782 237 ProSiteProfiles dnaJ domain profile. 171 233 IPR001623 -
Glsi08g1782 237 CDD DnaJ 172 226 IPR001623 -
Glsi08g1782 237 Gene3D DnaJ domain 169 237 IPR036869 -
Glsi08g1782 237 Coils Coil 211 231 - -
Glsi08g1782 237 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 235 - -
Glsi08g1782 237 Pfam DnaJ domain 172 233 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1782 Glsi-ChrGlsi08 12663585 12670590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1782 127 228 Miscellaneous Gene Families AT5G49580 37.255 6.16e-07 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0464 10 2968796 2972091 Glsi08g1782 08 12663585 12670590 CCT
Glsi08g1782 08 12663585 12670590 Glsi08g1782 08 12663585 12670590 ECH