Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1075 ATGGCCGCAGACAGCGTTGTTGAGTCCATCGATTTTCCCGTGAAGAGGCAGAGGGAAGATGAAGAAAATGGGGTCTCCGCTTCTACCGTCTCCATGGAGACGGAGGGTAACAAGGACCCTGATGGTATATCAGCTGTGATTCCCGGGTGGTTCTCCGAAATTAGCCCAATGTGGCCTGGGGAGGCACACTCCTTGAAAGTTGAAAAGATCTTGTTTCAAGGGAAGTCTGAATACCAGAATGTCATGGTCTTCCAGTCATCAACATATGGCAAGGTTCTCATTTTGGATGGAGTAATTCAGCTTACTGAAAGGGATGAATGTGCCTACCAAGAGATGATCACTCATCTTCCCCTGTGCTCTATTCCAAATCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGGGTCCTGCGGGAAGTATCACGCCATTCTTCAATTGAGAAGATAGACATTTGCGAAATTGACAAGATGGTAGTTGATGTCTCCAAGCAATTTTTCCCTGAAATAGCTGTAGGGTATGAGGATCCACGTGTGACACTTCATATCGGTGACGGAGTTGCATTTTTGAAGGCAGTTCCAGAAGGAACATATGATGCAATTATAGTGGACTCATCTGACCCTATAGGCCCTGCTCAAGAGCTTTTTGAAAAGCCCTTTTTCCAGTCCGTTGCAAATGCTCTACGTCCAGGAGGAGTTGTGTGTACGCAGGCGGAAAGTATATGGCTTCATATGCATATCATCGAGGACATAGTTGCAAATTGTCGCCAGATATTCAAAGGCTCTGTCAACTATGCTTGGACTACAGTTCCTACATACCCAAGTGGGGTGATTGGTTTTATGCTTTGCTCAACCGAGGGACCTTCTGTTGATTTCAAGCATCCTGTGAATCCTATAGATGAAAATGATAGTCAGAAGTCAGTAAGACCACTGAAGTTTTACAACTCTGAGATTCATACAGCATCTTTCTGTTTGCCATCTTTTGCCAAGAGGGTGATTGAGTCTAAAGCAAATTAA 1017 0.4474 MAADSVVESIDFPVKRQREDEENGVSASTVSMETEGNKDPDGISAVIPGWFSEISPMWPGEAHSLKVEKILFQGKSEYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSIEKIDICEIDKMVVDVSKQFFPEIAVGYEDPRVTLHIGDGVAFLKAVPEGTYDAIIVDSSDPIGPAQELFEKPFFQSVANALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPSVDFKHPVNPIDENDSQKSVRPLKFYNSEIHTASFCLPSFAKRVIESKAN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1075 338 Gene3D Spermidine synthase, tetramerisation domain 42 100 IPR037163 -
Glsi09g1075 338 Pfam Spermine/spermidine synthase domain 106 293 - -
Glsi09g1075 338 PANTHER SPERMIDINE/SPERMINE SYNTHASE 41 336 IPR001045 GO:0003824
Glsi09g1075 338 Gene3D Vaccinia Virus protein VP39 101 338 IPR029063 -
Glsi09g1075 338 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 127 140 IPR030373 -
Glsi09g1075 338 NCBIfam spermidine synthase 50 328 IPR001045 GO:0003824
Glsi09g1075 338 CDD AdoMet_MTases 126 237 - -
Glsi09g1075 338 FunFam Spermidine synthase 1 101 338 - -
Glsi09g1075 338 Hamap Polyamine aminopropyltransferase [speE]. 49 334 IPR001045 GO:0003824
Glsi09g1075 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 46 334 IPR029063 -
Glsi09g1075 338 Pfam Spermidine synthase tetramerisation domain 49 103 IPR035246 -
Glsi09g1075 338 PIRSF Spermidine_synth 39 338 IPR030668 GO:0006595
Glsi09g1075 338 FunFam Spermidine synthase 1 41 100 - -
Glsi09g1075 338 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 48 285 IPR030374 -
Glsi09g1075 338 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1075 Glsi-ChrGlsi09 7501601 7506109 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0844 05 58831142 58835159 Glsi09g1075 09 7501601 7506109 CCT
Glsi09g1075 09 7501601 7506109 Glsi09g1075 09 7501601 7506109 ECH