Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0844 ATGGCCGCAGAGACTGTTGTTGAGTCTAGCGATTTGCCCGTGAAGAGGCAGAGGGAGGGTGAAGAGAATGGGGTCTCTGCTTCTACCGTTTCTATGGAGACGGAGACGGAGGGTGACAAGCACCCTGAGTTTATGTCAACTGTGATTCCTGGGTGGTTCTCCGAAATTAGCCCAATGTGGCCTGGGGAGGCACACTCCTTAAAAGTGGAAAAGATCTTATTTCAAGGGAAGTCTGATTACCAAAATGTGATGGTCTTCAAGTCATCAACATATGGGAAGGTTCTTGTTTTGGATGGTGTAATTCAGCTCACTGAAAGAGATGAATGTGCCTACCAAGAAATGATCACACATCTTCCTCTGTGCTCAATCCCAAATCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTCCTACGAGAAGTATCACGCCATTCTTCTGTCGAGAAGATAGACATTTGTGAAATTGACAAGATGGTAGTTGATGTCTCCAAACAATTTTTCCCTGAAGTAGCAGTAGGATATAATGATCCACGTGTGACACTTCATATTGGTGATGGAGTTGCATTTTTGAAGGATGTTCCTGAAGGAACTTATGATGCAATTATAGTTGATTCATCTGACCCTATAGGTCCTGCTCAAGAGCTTTTTGAAAAGCCCTTTTTTAAGTTGGTTGCAAAGGCTCTTCGGCCAGGAGGAGTTGTGAGTACTCAGGCAGAAAGTATATGGCTTCATATGAATATTATTGAGGACATTGTGGCCAATTGTCGCCAGATATTTAAAGGCTCTGTCAACTATGCTTGGACTACAGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACCGAAGGAGCTCCTGTTGATTTCAAGCATCCAGTGAATCCTATAGATGCAAATGATACTCTGAAGTCAGTAAGACCACTGAAGTTTTACAACTCCGAGATTCATACAGCAGCATTTTGTTTGCCATCTTTTGCTAAGAGAAGGATTGATACCAATCAAGAGCCTGAAGGAGCATGTCTGGCTGTTTTAGAAGGCTAG 1056 0.4318 MAAETVVESSDLPVKRQREGEENGVSASTVSMETETEGDKHPEFMSTVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFKSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPEVAVGYNDPRVTLHIGDGVAFLKDVPEGTYDAIIVDSSDPIGPAQELFEKPFFKLVAKALRPGGVVSTQAESIWLHMNIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGAPVDFKHPVNPIDANDTLKSVRPLKFYNSEIHTAAFCLPSFAKRRIDTNQEPEGACLAVLEG 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0844 351 PIRSF Spermidine_synth 40 340 IPR030668 GO:0006595
Glsi05g0844 351 FunFam Spermidine synthase 1 103 340 - -
Glsi05g0844 351 Pfam Spermine/spermidine synthase domain 108 295 - -
Glsi05g0844 351 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 48 335 IPR029063 -
Glsi05g0844 351 Hamap Polyamine aminopropyltransferase [speE]. 51 336 IPR001045 GO:0003824
Glsi05g0844 351 NCBIfam spermidine synthase 52 330 IPR001045 GO:0003824
Glsi05g0844 351 CDD AdoMet_MTases 128 236 - -
Glsi05g0844 351 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 129 142 IPR030373 -
Glsi05g0844 351 FunFam Spermidine synthase 1 43 102 - -
Glsi05g0844 351 Gene3D Spermidine synthase, tetramerisation domain 44 102 IPR037163 -
Glsi05g0844 351 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 50 287 IPR030374 -
Glsi05g0844 351 Gene3D Vaccinia Virus protein VP39 103 339 IPR029063 -
Glsi05g0844 351 PANTHER SPERMIDINE/SPERMINE SYNTHASE 37 336 IPR001045 GO:0003824
Glsi05g0844 351 MobiDBLite consensus disorder prediction 1 40 - -
Glsi05g0844 351 Pfam Spermidine synthase tetramerisation domain 51 105 IPR035246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0844 Glsi-ChrGlsi05 58831142 58835159 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0844 05 58831142 58835159 Glsi09g1075 09 7501601 7506109 CCT
Glsi05g0844 05 58831142 58835159 Glsi05g0844 05 58831142 58835159 ECH