Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0706 ATGGCGAGAAGATCCTTTCCAGTTCTTAAACAACTATTCAAAATATCGCAGTCCTCCGACGCACCGGACATCTTCAACTCCTGCTTCAGATTCAATCCCAACCGATCCGTGACGTACATGCCCCGACCCGGAGACGGGACTCCTCGAGCCGTTACCCTCATACCCGGTGATGGAATCGGACCTCTGGTTACCGGCGCCGTTGAACAAGTGATGGAGGCGATACACGCGCCGGTGTACTTCGAAAAATATGAAGTGCGGGGGGACATGAAGAAAGTGCCGCAGGAGGCGATCGATTCGATAAAGAAGAACCAAGTGTGCTTGAAGGGTGGATTGGTTACACCTATGGGCGGTGGTGTGAGCTCGTTGAACGTGCAGCTAAGGAAGGAGCTTGATCTGTATGCTTCGCTCGTGAATTGCTTTAATCTTCCTGGGTTGCCGACGAGGCACGAGAATGTTGATATTGTCGTGATTAGGGAGAACACGGAGGGGGAATATTCTGGTCTGGAACACGAGGTCGTTCCTGGCGTCGTTGAAAGCCTCAAGGTAATAACAAAGTTCTGTTCAGAGCGCATAGCTAAATATGCTTTTGAGTATGCTTACCTAAACAATAGAAAGAAAGTGACTGCCGTGCACAAAGCAAACATTATGAAGCTTGCAGATGGTTTATTTTTGGAATCTTGTCGAGAGGTTGCCACAAAGTATCCTGGAATCAAGTATAACGAAATTATTGTGGATAACTGCTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTAACCCCCAATCTTTATGGAAATCTAGTTGCAAATACAGCAGCAGGTATTGCTGGAGGCACTGGAGTAATGCCAGGAGGTAATGTTGGGGCTGATCATGCTGTGTTTGAGCAAGGTGCTTCAGCAGGAAATGTCGGTAATGATAAAATAGTGGAACAAAAGAAAGCAAACCCAGTAGCACTGCTTCTCTCATCGGCCATGATGCTCAGACATCTCCAGTTTCCTGCCTTTGCTGACCGATTGGAAACTGCTGTGAAACGAGTCATTCTTGAGGGCAATTACCGGACTAAGGACCTTGGAGGGCAAAGCACCACCCAAGAGGTTGTTGATGCCGTACTAAATGCTTTAGACTGA 1137 0.4767 MARRSFPVLKQLFKISQSSDAPDIFNSCFRFNPNRSVTYMPRPGDGTPRAVTLIPGDGIGPLVTGAVEQVMEAIHAPVYFEKYEVRGDMKKVPQEAIDSIKKNQVCLKGGLVTPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNDKIVEQKKANPVALLLSSAMMLRHLQFPAFADRLETAVKRVILEGNYRTKDLGGQSTTQEVVDAVLNALD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0706 378 NCBIfam isocitrate dehydrogenase (NAD(+)) 47 376 IPR004434 GO:0006099
Glsi09g0706 378 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 49 377 - -
Glsi09g0706 378 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 38 377 - -
Glsi09g0706 378 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 42 377 - -
Glsi09g0706 378 Gene3D Isopropylmalate Dehydrogenase 38 376 - -
Glsi09g0706 378 SMART Iso_dh_2 50 373 IPR024084 -
Glsi09g0706 378 Pfam Isocitrate/isopropylmalate dehydrogenase 51 373 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0706 Glsi-ChrGlsi09 4853214 4856596 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1255 05 61995474 62002207 Glsi09g0706 09 4853214 4856596 CCT
Glsi09g0706 09 4853214 4856596 Glsi09g0706 09 4853214 4856596 ECH