Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1255 ATGAGATGGGGAAAAATGGCGGTGGGGATAGAAGAAAAAGAAGACAGGTGTTGCTGTAAGTGGTCCTCTGGCTGGAGCTGCGTTTGCGGCCGTTACCGATGCTTGGAGACAAAAGTGTCGCCGCTACGGCTCCGATCAATGGCGAGAAGAACCGCACCAGTCTTAAAACAGCTCTTCACCAGATTCGCCCCCAACCGGTCCGTGACGTACATGCCCCGACCCGGGGATGGGGCTCCACGAGCTGTGACCCTTATACCCGGAGATGGGATCGGGCCTTTGGTCACGGGCGCCGTCGAGCAAGTGATGGAGGCGATGCACGCGCCGGTGTACTTCGAGAAATATGAAGTACGAGGGGACATGAACAAATTTCCGCAGGAGGTGATCGACTCGATAAGGAAGAACAAAGTGTGCTTGAAGGGTGGTCTGGCTACGCCTATGGGTGGTGGTGTGAGCTCGTTGAACATGCAGCTAAGGAGAGAGCTTGATCTATACGCTTCGCTCGTGAATTGTTTTAATCTTCCTGGGTTGATCACGAAGCATGATAATGTTGATATTGTCGTGATTAGGGAAAACACCGAGGGAGAGTACGCCGGTTTGGAACACGAAGTCGTTCCCGGCGTCGTCGAAAGCCTTAAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCTAGATATGCGTTCGAGTATGCTTACCTAAATAACAGAAAGAAAGTGACTGCGGTGCACAAAGCGAACATTATGAAGCTTGCGGATGGTTTGTTCTTGGGATCTTGTCGAGAGGTTGCCACTAATTATCCTGGAATCCAATATAATGAAATCATTGTGGATAACTGCTGCATGCAACTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTAACCCCCAATCTTTATGGAAATCTAGTTGCGAATACAGCAGCAGGTATTGCTGGAGGCACGGGAGTTATGCCTGGAGGTAATGTTGGAGCTGATCATGCTGTGTTTGAGCAAGGTGCTTCAGCAGGAAATGTTGGTAATGATAAATTAGCCCAACAAAAGACAGCAAACCCAGTGGCACTACTTCTCTCGTCGGCCATGATGCTTAGACATCTCCAGTTTCCTGCATTTTCTGACCGATTGGAGAATGCTGTGAATCAAGTCATTTTAGAGGGCAAGTACCGGACAAAGGACCTTGGAGGGACAAGCACCACCCAAGATGTCGTTGATGCAGTAATAAATGCTTTAGACTGA 1230 0.4894 MRWGKMAVGIEEKEDRCCCKWSSGWSCVCGRYRCLETKVSPLRLRSMARRTAPVLKQLFTRFAPNRSVTYMPRPGDGAPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKYEVRGDMNKFPQEVIDSIRKNKVCLKGGLATPMGGGVSSLNMQLRRELDLYASLVNCFNLPGLITKHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIARYAFEYAYLNNRKKVTAVHKANIMKLADGLFLGSCREVATNYPGIQYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNDKLAQQKTANPVALLLSSAMMLRHLQFPAFSDRLENAVNQVILEGKYRTKDLGGTSTTQDVVDAVINALD 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1255 409 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 81 408 - -
Glsi05g1255 409 Pfam Isocitrate/isopropylmalate dehydrogenase 82 404 IPR024084 -
Glsi05g1255 409 SMART Iso_dh_2 81 404 IPR024084 -
Glsi05g1255 409 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 71 408 - -
Glsi05g1255 409 NCBIfam isocitrate dehydrogenase (NAD(+)) 78 408 IPR004434 GO:0006099
Glsi05g1255 409 Gene3D Isopropylmalate Dehydrogenase 68 409 - -
Glsi05g1255 409 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 69 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1255 Glsi-ChrGlsi05 61995474 62002207 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1255 05 61995474 62002207 Glsi09g0706 09 4853214 4856596 CCT
Glsi05g1255 05 61995474 62002207 Glsi05g1255 05 61995474 62002207 ECH