Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0607 ATGGGGTCTCTCTGTTTTCCTCTGGTTTCTCTATTTCTGATGGTTGCAGCTTCAGGAGTATTTTTTGGAGCAGAATCAAAGACATATTGGGGAGATGCAGAGGTTTTGAAGGAGCTGAAGAATGGGCTCGACCCTGGTTCTGTAAGTCCCGGTTCATGTGTGAGTTCTTGGGACTTCACTGTTGACCCATGCGACAACGTCTTCGGCGAGAAATTCACGTGCGGGTTGAGGTGCGACCTCGTCGCGTCCGGGTTGAGTCGAGTCACAGAACTCAGCCTTGACCAGGCGGGTTATGCTGGATCTCTGGCATCCACTTGGAACCTTCCTTACTTAGAAACTCTGGACGTCTCAAACAACTACTTTTCTGGTCGAATTCCTGAGTCGTTATCAAACTTGACTCGGCTGCGCCAACTCGGTTTGTCAAGAAATTTGTTTAACGGCGAGATACCCGCTTCCATTGGGTTCCTCTCGAATCTTGAAGAACTATACCTTGATAGCAATAATCTGCAAGGAACAATCCCAGCTAGTTTCAGTGGCCTTGTGAGCTTGAAGAGGCTTGAAATTCAACTCAACAAGCTCAGTGGGCAGCTTCCCGATTTGAGTTCTCTCAAAAACCTTTCCTACTTGGACGTCAGCGACAATGCCGTCACCGGAGAAGTTCCAGCGTCATTGCCCAATTCCTTAGTTCAAATTTCAATGAGGAACAACAGCTTAAGTGGAGCGTTAACATCGGAAAGCATCAGAAATTTGATGTATTTACAGGTGGTGGATTTAAGTTATAACCGACTCAGTGGCTCTGTTCCAATCGTTCTTTTTGAGCTTCCGTCGTTGCAGCAATTGACCCTCTCCTTCAATCGGTTGTGGTCCATAGAAGTTCCATCATACACTTTGGGCACCAAAAGCGGGCTCATAGCGGTTGATCTAAGCGACAACCAGCTTGAAGGGCTGTTACCCTCATTCATGGCACTGATGCCAAAGCTTTCATCTTTGTCCTTGGAGAACAACAAGTTCACGGGTATGATACCGACCCAGTACGCACTGAAGGCAGTTTTTCCGGAATCCGGAATGTCACCATTCGAAAGGCTGTTGTTGGGTGGGAATTACCTGTTTGGAGGCATACCCAGTCCTCTACTGGCACTCAAGCCCGATTCTGCCAATGTGAGCCTAGCCCACAACTGCTTGTACAGATGCCCTCTCACTTTCTTTTTCTGTCAGGGTGCTCAACAAAAATCATTAGCCGAGTGCAAGAAATTTAGCCCCGTCATCCCTTAG 1272 0.4764 MGSLCFPLVSLFLMVAASGVFFGAESKTYWGDAEVLKELKNGLDPGSVSPGSCVSSWDFTVDPCDNVFGEKFTCGLRCDLVASGLSRVTELSLDQAGYAGSLASTWNLPYLETLDVSNNYFSGRIPESLSNLTRLRQLGLSRNLFNGEIPASIGFLSNLEELYLDSNNLQGTIPASFSGLVSLKRLEIQLNKLSGQLPDLSSLKNLSYLDVSDNAVTGEVPASLPNSLVQISMRNNSLSGALTSESIRNLMYLQVVDLSYNRLSGSVPIVLFELPSLQQLTLSFNRLWSIEVPSYTLGTKSGLIAVDLSDNQLEGLLPSFMALMPKLSSLSLENNKFTGMIPTQYALKAVFPESGMSPFERLLLGGNYLFGGIPSPLLALKPDSANVSLAHNCLYRCPLTFFFCQGAQQKSLAECKKFSPVIP 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0607 423 Gene3D Ribonuclease Inhibitor 31 198 IPR032675 -
Glsi09g0607 423 SMART LRR_typ_2 203 227 IPR003591 -
Glsi09g0607 423 SMART LRR_typ_2 274 299 IPR003591 -
Glsi09g0607 423 SMART LRR_typ_2 156 179 IPR003591 -
Glsi09g0607 423 SMART LRR_typ_2 108 132 IPR003591 -
Glsi09g0607 423 SMART LRR_typ_2 324 347 IPR003591 -
Glsi09g0607 423 FunFam Nuclear pore complex protein NUP107 30 199 - -
Glsi09g0607 423 Pfam Leucine rich repeat 157 215 IPR001611 GO:0005515
Glsi09g0607 423 Pfam Leucine rich repeat 228 287 IPR001611 GO:0005515
Glsi09g0607 423 SUPERFAMILY L domain-like 78 413 - -
Glsi09g0607 423 Pfam Leucine Rich Repeat 111 132 IPR001611 GO:0005515
Glsi09g0607 423 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 10 416 - -
Glsi09g0607 423 Gene3D Ribonuclease Inhibitor 199 417 IPR032675 -
Glsi09g0607 423 Coils Coil 183 203 - -
Glsi09g0607 423 PRINTS Leucine-rich repeat signature 253 266 - -
Glsi09g0607 423 PRINTS Leucine-rich repeat signature 274 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0607 Glsi-ChrGlsi09 4208190 4209461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0607 86 398 Receptor kinase-like Gene Family AT1G17750 28.994 4.18e-25 106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1377 05 62785304 62787238 Glsi09g0607 09 4208190 4209461 CCT
Glsi09g0607 09 4208190 4209461 Glsi09g0607 09 4208190 4209461 ECH
Glsi09g0607 09 4208190 4209461 Glsi05g1377 05 62785304 62787238 ECH