Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0549 ATGGACAAGAGAGGCGGAGAAGAGCACACAAGTATCAACAAATATGCTTTAGCTTGTGCTGTTGTGGCTTCCATGATATCCATAATATTTGGTTACGATACTGGAGTTATGAGTGGAGCCATGATATTCATAAAGGAAGATCTCAGAACCAATGACGTCCAAGTGGAAGTTCTAGCAGGTATCTTAAACCTGTGCGCACTGGTGGGATCCTTAGCTGCTGGAAGAATATCTGATTACATCGGTCGCCGCTACACAATCATGCTGGCCTCTATCCTCTTCATGGTTGGTGCGGTTCTCATGGGCTATGGCCCAAACTTTGCAGTTTTAATGGCGGGAAGGTGCACAGCTGGTATTGGCGTGGGCTTTGCCCTTATGATAGCACCCGTTTATTCTGCAGAGATTTCCTCGGCAAAATCCCGGGGTCTACTAACCTCCCTACCAGAGCTTTGTATTGGCATTGGGATCTTATCTGGCTATGTGTCAAACTTCATTTTTGGGAAATTGAGTTTGAAACTTGGATGGAGATTGATGCTCGGTATCGCAGCAATTCCTTCACTTGCCTTGATTTTCGGCATTCTGAAAATGCCAGAGTCTCCAAGGTGGCTGGTAATTCAGGGCCGTCTAGGAAGCGCTAAGAAAGTCCTGTTGCAAGTTTCTAATACCCCAGAAGAAGCTGAACAACGCTTCAAGGATATAAAAATCGCAGCTGGGATTGACGAGAATTGCAAAGAGGACATTCTTAAGCTCCCAAAGAATACCCACGGTGGAGGGGTTTGGAAAGAGTTGCTTATCAGACCCTCGCCTTCTGTCCGTTGGATCCTAATTGCAGCAGTTGGGATTCACTTCTTCGAGCATGCAACTGGCATAGAAGCTGTGATTTTGTACAGTCCGAGAATCTTTAAGAAAGCCGGTGTCACCGCTAAGGATAAGCTCTTGCTTGCAACTATCGGAGTAGGCATTACAAAGGTCTTCTTTCTCATAATAGCCACATTCTTGCTCGACAAGGTTGGAAGAAGACGCCTCTTGCTTGCAAGCACTGGAGGCATGATTTGTGCCCTCACGGTATTAGGTTTCAGTTTGACCATGGCGGATCATTCCAAAGAAAAGCTCGTGTGGGCCTTGATCCTTAGTATAGTCGCCACTTACGCCTTTGTTGCTTTCTTTAACATTGGGCTTGGGCCTGTCACATGGGTCTATAGCTCCGAGATATTTCCTCTGAAGTTGAGAGCCCAAGGGGCCAGTATTGGAGTTGCCGTGAACAGGCTCATGAATGCGGCTGTTTCTATGAGTTTTATTTCCATCTACGAAGCAATCACTATAGGGGGGGCCTTTTTCATGTTTGCTGGTATATCTGCATTAGCTTGGGCATTCTTCTATTTGTGCCTGCCGGAAACCAAGGGCAGGACCTTGGAAGAGATGGAGATGCTTTTTAGCAAAAATAGTAGTCGTAATATCAATGTACCGACGGAAACTGATCCTGCACAGAATGCGTAG 1494 0.4618 MDKRGGEEHTSINKYALACAVVASMISIIFGYDTGVMSGAMIFIKEDLRTNDVQVEVLAGILNLCALVGSLAAGRISDYIGRRYTIMLASILFMVGAVLMGYGPNFAVLMAGRCTAGIGVGFALMIAPVYSAEISSAKSRGLLTSLPELCIGIGILSGYVSNFIFGKLSLKLGWRLMLGIAAIPSLALIFGILKMPESPRWLVIQGRLGSAKKVLLQVSNTPEEAEQRFKDIKIAAGIDENCKEDILKLPKNTHGGGVWKELLIRPSPSVRWILIAAVGIHFFEHATGIEAVILYSPRIFKKAGVTAKDKLLLATIGVGITKVFFLIIATFLLDKVGRRRLLLASTGGMICALTVLGFSLTMADHSKEKLVWALILSIVATYAFVAFFNIGLGPVTWVYSSEIFPLKLRAQGASIGVAVNRLMNAAVSMSFISIYEAITIGGAFFMFAGISALAWAFFYLCLPETKGRTLEEMEMLFSKNSSRNINVPTETDPAQNA 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0549 497 ProSitePatterns Sugar transport proteins signature 1. 73 90 IPR005829 GO:0016020|GO:0022857|GO:0055085
Glsi09g0549 497 ProSiteProfiles Major facilitator superfamily (MFS) profile. 19 466 IPR020846 GO:0022857
Glsi09g0549 497 PRINTS Sugar transporter signature 110 129 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi09g0549 497 PRINTS Sugar transporter signature 284 294 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi09g0549 497 PRINTS Sugar transporter signature 27 37 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi09g0549 497 PRINTS Sugar transporter signature 401 413 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi09g0549 497 PRINTS Sugar transporter signature 378 399 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi09g0549 497 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 10 480 IPR045262 GO:0015144
Glsi09g0549 497 NCBIfam sugar porter family MFS transporter 14 473 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi09g0549 497 CDD MFS_PLT 22 473 IPR044776 GO:0005351
Glsi09g0549 497 FunFam probable polyol transporter 4 9 480 - -
Glsi09g0549 497 SUPERFAMILY MFS general substrate transporter 10 474 IPR036259 -
Glsi09g0549 497 Gene3D MFS general substrate transporter like domains 8 481 IPR036259 -
Glsi09g0549 497 Pfam Sugar (and other) transporter 19 477 IPR005828 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0549 Glsi-ChrGlsi09 3825464 3827039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0549 2 483 Organic Solute Cotransporters AT4G36670 69.979 0.0 717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0549 09 3825464 3827039 Glsi05g1477 05 63404033 63410767 ECH
Glsi09g0549 09 3825464 3827039 Glsi09g0549 09 3825464 3827039 ECH