Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1477 ATGCATGGCTGCCGGAAGAGTCTCCGATTTTATTGGTCTTCGCTATACCTTCAATATTCTAGCTTCCACTATCTTCTTGTTGGGCTCTATTCTAATGGGGTATGGTCCATCTTACCCAATCTTAGGAGGTATGGTGGTGACCCACTTAGGGTTAGGTGTTTGCTTGACCATAGTGGAACGTTCAAGAGAGAAGATGTTATGGGCAATGAGCTTCGCTATCGTTGGTACCTACATATTTGTGGCCTTCATGGCTATTGGAATGGGGCCCGTGACAAACCAGGATCACTTTTTCGGCGTTTGACTAGAAAAGTTGAGCAACAAATTGGTAGAGAATTTGCAAAACGTGTTCACTTGCTAGAACTTGCTAGGCCCTTACAACATGATTATAATGGAGCACAGAGAGGTAGAAAGGAAGAGGAAACCTTTAATATGGAGACTGTAACGGCGAAGGGTGGCGGAGAAGACCAGACAAGGTTCAACAAATATGCTTCTGCCTGTGCTATAGTCGCCTCCATGATATCCATTATTTTTGGCTATGATACTGGTGTTATGAGTGGAGCTATGATATTCATAAAGGAAGATCTCAAAATCAGTGACACCCAAGTGGAAGTTCTAGTAGGCATCTTAAACCTCTGTGCATTAGTAGGATCCTTAACTGCTGGAAGAACCGCTGATTACATTGGTCGCCGCTACACAATCGTCATGGCCTCTATCCTCTTCCTCCTTGGTGCAATTCTCATGGGTTATGGCCCAAACTACGCAATTTTAATGTTGGGAAGGTGTACTGCTGGTATTGGCGTCGGCTTTGCTCTTATGATAGCCCCAGTTTACTCTGCAGAAATTTCCTCTGCTTCATCTCGGGGTTTTCTAACCTCTCTGCCTGAGCTTTGTATTGGTATTGGGATCTTACTTGGCTATGTCTCAAACTACTTCTTTGGGAAATTGCCTTTGAAACTTGGATGGAGATTGATGCTTGGTATCGCTGCCATTCCTTCACTTGCTTTGGCTTTTGGTATTTTAAGGCTGCCAGAGTCCCCAAGGTGGCTAGTAATGCAAGGTCGTCTAGGAAATGCCAAGAAAGTCCTATTGCAAATTTCCAATACCACAGAGGAGGCTGTACTTCGCTTCAGGGACATAAAAATCGCAGCTGGAATTGACGAGGCTTGCCAAGAGGACATAGTTAAGCTTTCTAAAAGGTCCCAAGGTGAAGGAGTTTGGAAAGAGTTGCTTGTCAGGCCCTCTCCTTCTGTTCGTTGGATGCTAACTGCAGCAGTTGGGATTCACTTTTTTGAGCATGCAACCGGCATAGAAGCTGTGATGTTATATAGCCCAAGAATCTTTAAGGAAGCTGGTGTCACCAGCAAGGACAAGCTCTTGCTCACAGTAATTGGTATAGGCGTTACAAAGATCATCTTTTTGGTCATAGCCTCGTTCTTGCTTGACAAAGTTGGAAGAAGACGCCTCTTGCTAACAAGCACTGGAGGAATGATTTGTGCCCTCGCAATATTAGGATTCAGCTTGACCATGGCGGATCATTCCGCAGACAAGCTATTATGGGCTTTGACCCTTAGCATAGCGGCCACTTACGCCAACGTTGCTTTCTTTAATATTGGGCTTGGGCCTGTCACTTGGGTTTATAGCTCTGAGATATTTCCCTTGAAGTTGAGAGCACAAGGGGCGAGTATTGGAGTTGCCGTGAACAGGATCTTGAATGCTATTGTTTCAATGAGTTTTATCTCAATCAACAAGGCAATCACTATTGGTGGGAGCTTCTTCATGTTTGCCGGTATATCTGCATTAGCTTGGGCGTTCTTCTTTTTGTTCCTGCCAGAAACCAAGGGCAGGTCCTTGGAAGAAATGGAGACACTTTTTACCAAAAAAAATAACCGCAGAAATGTAGCTGGCGAAACTGATCCTGGACAGAATGCCTGA 1932 0.4467 MHGCRKSLRFYWSSLYLQYSSFHYLLVGLYSNGVWSILPNLRRYGGDPLRVRCLLDHSGTFKREDVMGNELRYRWYLHICGLHGYWNGARDKPGSLFRRLTRKVEQQIGREFAKRVHLLELARPLQHDYNGAQRGRKEEETFNMETVTAKGGGEDQTRFNKYASACAIVASMISIIFGYDTGVMSGAMIFIKEDLKISDTQVEVLVGILNLCALVGSLTAGRTADYIGRRYTIVMASILFLLGAILMGYGPNYAILMLGRCTAGIGVGFALMIAPVYSAEISSASSRGFLTSLPELCIGIGILLGYVSNYFFGKLPLKLGWRLMLGIAAIPSLALAFGILRLPESPRWLVMQGRLGNAKKVLLQISNTTEEAVLRFRDIKIAAGIDEACQEDIVKLSKRSQGEGVWKELLVRPSPSVRWMLTAAVGIHFFEHATGIEAVMLYSPRIFKEAGVTSKDKLLLTVIGIGVTKIIFLVIASFLLDKVGRRRLLLTSTGGMICALAILGFSLTMADHSADKLLWALTLSIAATYANVAFFNIGLGPVTWVYSSEIFPLKLRAQGASIGVAVNRILNAIVSMSFISINKAITIGGSFFMFAGISALAWAFFFLFLPETKGRSLEEMETLFTKKNNRRNVAGETDPGQNA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1477 643 FunFam probable polyol transporter 4 156 627 - -
Glsi05g1477 643 CDD MFS_PLT 169 620 IPR044776 GO:0005351
Glsi05g1477 643 Gene3D MFS general substrate transporter like domains 155 629 IPR036259 -
Glsi05g1477 643 ProSiteProfiles Major facilitator superfamily (MFS) profile. 166 613 IPR020846 GO:0022857
Glsi05g1477 643 ProSitePatterns Sugar transport proteins signature 1. 476 493 IPR005829 GO:0016020|GO:0022857|GO:0055085
Glsi05g1477 643 PRINTS Sugar transporter signature 525 546 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi05g1477 643 PRINTS Sugar transporter signature 174 184 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi05g1477 643 PRINTS Sugar transporter signature 548 560 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi05g1477 643 PRINTS Sugar transporter signature 431 441 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi05g1477 643 PRINTS Sugar transporter signature 257 276 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi05g1477 643 NCBIfam sugar porter family MFS transporter 158 620 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi05g1477 643 ProSitePatterns Sugar transport proteins signature 1. 220 237 IPR005829 GO:0016020|GO:0022857|GO:0055085
Glsi05g1477 643 SUPERFAMILY MFS general substrate transporter 155 621 IPR036259 -
Glsi05g1477 643 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 157 628 IPR045262 GO:0015144
Glsi05g1477 643 Pfam Sugar (and other) transporter 166 624 IPR005828 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1477 Glsi-ChrGlsi05 63404033 63410767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1477 153 630 Organic Solute Cotransporters AT4G36670 69.102 0.0 702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0549 09 3825464 3827039 Glsi05g1477 05 63404033 63410767 ECH
Glsi05g1477 05 63404033 63410767 Glsi05g1477 05 63404033 63410767 ECH