Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0256 ATGGCCGTTCAAGCTCAATACCCATCCAATGTCCTCTTTCTAAACAGAAACGGACAAGAAGGTTACGACTGTTCATTACAACCACAACCGGGGGGACTCCTTGATCAATCCCATATGTTATTCAACAATGGAGCAGGTACTAATTCTCGGAAGAGAGGAAGAGAAACTACAGCAGCCACCGGGATTGCCCAGGCAGCCCCTAATGTTATTAATTCATTCTCTTTGCAATCGCAGCCTCCTCAGCTCATAGACCTCTCGCAGCTCCATAATCAGCAACAAAATGTGGTCTCCACCGGCCTCCGCTTATCCTTCGGTGACCAGCAACAACATCATAGACTTCAGTTACACCAACAACAAGATGGGTGTCAGTCCTCTGCTTTCTTATCTCTATTATCTGAAGGATTTGCCTCGCAAATCAAACAACAGAGAGACGAGATTGACCAATTCCTTCAAGCCCAGGAAGAGCAATTGCGTCGGGAATTAGCAGAGAGGAGGCAGAGGCATTACCGTGCCCTACTAAGCGCAGCGGAAGAAACCGTGACCCGGCGGTTAAGAGAGAAGGAGGTTGAGGTGGAAAAAGCTACGCGCAGGAACGCAGAGTTAGAGGCACGTGCGGCGCAGCTTAGCGTGGAAGCGCAAGTTTGGCACGCCAAGGCTAAAGCACAAGAAGCAACCGCTGCTTCTTTACAAGCCCAACTGCAGCAGGCTATTATGAGCGGTACCGCAGAAAAACGGGGGGGTTGCATTGCAGAGGACGGTGGGCTATCATGCGCCGTGGGCGTGGAGGGCCAAGCCGAGGACGCTGAGTCGGCATATGTTGACCCGGACCGAGTCGTGGTACCAGGACCAAAATGTAGAGGCTGTGGGAAACGACTGGCTTCGGTGGTTGTATTGCCGTGTCGGCATCTATGCATCTGTACCAAATGCGACGCACATTTCCGAGCATGCCCCGTTTGCCTCACTGTCAAAAATTCAACCGTTGAAGTCTATCTGTCTTAG 999 0.5135 MAVQAQYPSNVLFLNRNGQEGYDCSLQPQPGGLLDQSHMLFNNGAGTNSRKRGRETTAATGIAQAAPNVINSFSLQSQPPQLIDLSQLHNQQQNVVSTGLRLSFGDQQQHHRLQLHQQQDGCQSSAFLSLLSEGFASQIKQQRDEIDQFLQAQEEQLRRELAERRQRHYRALLSAAEETVTRRLREKEVEVEKATRRNAELEARAAQLSVEAQVWHAKAKAQEATAASLQAQLQQAIMSGTAEKRGGCIAEDGGLSCAVGVEGQAEDAESAYVDPDRVVVPGPKCRGCGKRLASVVVLPCRHLCICTKCDAHFRACPVCLTVKNSTVEVYLS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0256 332 Pfam Zinc finger, C3HC4 type (RING finger) 284 321 - -
Glsi09g0256 332 ProSiteProfiles Zinc finger RING-type profile. 285 319 IPR001841 -
Glsi09g0256 332 Coils Coil 139 159 - -
Glsi09g0256 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 332 IPR013083 -
Glsi09g0256 332 Coils Coil 177 211 - -
Glsi09g0256 332 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 267 331 - -
Glsi09g0256 332 PIRSF SBP1_RNase_bind 1 332 IPR017066 -
Glsi09g0256 332 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 43 329 IPR017066 -
Glsi09g0256 332 CDD mRING-HC-C3HC5_CGRF1-like 283 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0256 Glsi-ChrGlsi09 1838134 1839441 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1816 05 65875739 65877109 Glsi09g0256 09 1838134 1839441 CCT
Glsi09g0256 09 1838134 1839441 Glsi09g0256 09 1838134 1839441 ECH