Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1816 ATGGCTGTTCAAGCTCAATACCCATCCAATGTCCTCCTTCTAAACAGAAACGGACAGGAAGGACATGACTATTCATTACAACCACAACCAGGAGGAATCCTTGATCAATCCCATATGTTATTCAACAATGGAGCAGGTACTAATTCTCACAAGAGAGGAAGAGAAGCAACAGCAGCCACCGGGGTCGCCTACGCAGCCCCTCATGTTATTAATCCCTTCTCTTTGCATTCCCAGCCTCCTCAGCTTATAGAACTCTCTCAGCTTCATAACCAGCAACAAAATGTGGTCTCTACAGGCCTCCGATTATCCTTTGGTAACCAGCAACATCATCATCAGCAAATACTACAATTACAGCAGCAGCAACATCACCACAACCACCATCAAGGGTGTCAGTCCTATGCTTTCTCATCCCTATTGCCCGAAGGATTTGCGTCGCAAATCAAACAACAGTATGATGAAATCGACCAATTCCTTCAAGCCCAGGGAGAGCAATTGCGACGGGCATTAGCGGAGAAGAGACAGAGACATTATCGTTCACTATTAAGCGCAGCGGAGGAATCAGCGGCCCGGCGCCTGAGAGAGAAGGACGTTGAGGTAGAAAAAGCCACTCGCAGGAACGCCGAGTTAGAGGCACGCGCAGCGCAGCTTAGCGTGGAAGCACAGGTCTGGCAGGCAAAGGCTAAAGCACAGGAGGCAACGGCTGCCTCTTTACACGCGCAACTGCAGCAGGCAATTATGAGCGGTGGGCAGGAAAAAGGGAGCGGTTGTTTTGGGGAGGATGGTGGGATATCATGTGCGGTGGGCGTAGAGGGCCAACCGGAGGATGCCGAGTCAGCCTATATTGACCCGGACCGAGTCGAGGTAGGTGGACCGAAATGCAGAGGATGCGGGAAGCGAGTGGCTTCGGTGGTTGTATTGCCGTGTCGGCACCTATGCATCTGCACGGAATGCGACACACATTTCCGAGCCTGCCCCGTCTGCCTCACCATAAAAAATTCAACCGTTGAAGTCTATCTATCTTAG 1023 0.5122 MAVQAQYPSNVLLLNRNGQEGHDYSLQPQPGGILDQSHMLFNNGAGTNSHKRGREATAATGVAYAAPHVINPFSLHSQPPQLIELSQLHNQQQNVVSTGLRLSFGNQQHHHQQILQLQQQQHHHNHHQGCQSYAFSSLLPEGFASQIKQQYDEIDQFLQAQGEQLRRALAEKRQRHYRSLLSAAEESAARRLREKDVEVEKATRRNAELEARAAQLSVEAQVWQAKAKAQEATAASLHAQLQQAIMSGGQEKGSGCFGEDGGISCAVGVEGQPEDAESAYIDPDRVEVGGPKCRGCGKRVASVVVLPCRHLCICTECDTHFRACPVCLTIKNSTVEVYLS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1816 340 Pfam Zinc finger, C3HC4 type (RING finger) 292 328 - -
Glsi05g1816 340 ProSiteProfiles Zinc finger RING-type profile. 293 327 IPR001841 -
Glsi05g1816 340 PIRSF SBP1_RNase_bind 1 340 IPR017066 -
Glsi05g1816 340 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 275 339 - -
Glsi05g1816 340 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 43 337 IPR017066 -
Glsi05g1816 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 340 IPR013083 -
Glsi05g1816 340 Coils Coil 192 226 - -
Glsi05g1816 340 CDD mRING-HC-C3HC5_CGRF1-like 291 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1816 Glsi-ChrGlsi05 65875739 65877109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1816 293 329 Miscellaneous Gene Families AT2G21380 37.838 8.12e-06 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1816 05 65875739 65877109 Glsi09g0256 09 1838134 1839441 CCT
Glsi05g1816 05 65875739 65877109 Glsi05g1816 05 65875739 65877109 ECH