Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1751 ATGGAACGTGCTCGGCGGCTGGCGAACCGGGCGATTCTGAAACGTCTGGTTTCAGAGGCGAAGCAGTGCCGCCAGAATGAATCTTTGTTGAACTCTTCAACCCCTGTATTGTACACACCTTCAAGGTACGTATCATCTCTTTCTCCCTCTGCTTTAAGCAGAGGATTCAAAGCAGAAAACTTGCTGGGCAGGAATCTGTCACGTAATGTTGGTTTTGGTGTTGGGTTTCAAACTCGATCCATTTCGATCGAGGCACTCAAACCCAGTGACACTTTTCCCCGACGCCATAACTCTGCCACCCCAGAAGAACAGAGTAAAATGGCGCAATCATGTGGGTTTGATAATCTTGACTCGCTTATTGAAGCCACGGTGCCTAAATCGATCCGGTTGAAGGAAATGAAGTTTGGTAAGTTTGATGAGGGGTTGACAGAGAGCCAAATGATTGAGCACATGAAGTATTTGGCGTCTAAGAACGAGGTTTTTAAGTCATATATTGGGATGGGGTACTATAACACCCATGTTCCATCTGTGATTTTGAGAAACATCATGGAAAACCCAGCTTGGTATACCCAGTACACTCCTTACCAAGCTGAGATATCTCAAGGACGTCTCGAGTCCTTACTTAATTTTCAGACCATGATCACAGATCTAACTGGTTTGCCCATGTCAAATGCTTCACTGCTTGATGAAGGAACTGCCGCTGCTGAGGCAATGTCTATGTGTAACAATATTCAGAAGGGAAAGAAAAAGACTTTTATCATTGCCAATAACTGTCACCCGCAAACCATTGATATTTGTAAGACAAGAGCGGACGGTTTCAATCTTAAGGTGGTTACAGCAGATCTTAAGGATATCGATTACAAATCGGGTGATGTTTGTGGTGTTCTTGTTCAGTACCCGGGCACTGAGGGTGAGATTTTGGATTATGGGGAATTCATTAAAACAGCTCATGCTCATGAAGTCAAGGTTGTTATGGCAACGGATCTCCTGGCATTGACGGTGTTGAAGCCTCCTGGTGAATTGGGGGCAGATATCGTTGTTGGCTCAGCTCAGAGGTTTGGGGTTCCAATGGGTTATGGAGGGCCTCATGCAGCGTTCCTGGCCACATCCCAAGAGTACAAGAGGATGATGCCTGGAAGAATTATTGGCGTCAGCATGGATTCTTCTGGGAAGACGGCATTGCGAATGGCAATGCAAACTAGGGAGCAGCATATTCGTAGGGACAAGGCTACCAGTAATATTTGCACTGCTCAGGCGCTGCTTGCAAACATGGCTGCTATGTATGCCGTATACCATGGACCTGAAGGCCTTAAATCCATTGCCCAACGAGTTCATGGTCTTGCCGGGGTATTTGCTCTTGGGTTAAAGAAACTTGGAACAGTGGATGTTCAGAATCTTCCCTTCTTTGACACTGTGAAGGTTAAGACTGCCAATGCCCTTGCCATTGCTGAAGCTGCTAAAAAAAGTGAAATAAATTTGCGAGTTGTTGATGGAAACACCATCACTGTTTCCTTTGATGAAACAAGCACCCTGAAGGATGTTGATGAGCTTTTCAAAGTTTTTGCTGGTGGCAAGCCTGTCTCCTTCACAGCTGAATCTCTTGCATCAAATGTTCAGACTGCTGTTCCTTCTGGACTAATTAGGGAGAGCCCTTATCTCACTCACCCTATCTTTAACACGTACCACACTGAGCACGAGTTGCTCAGGTACATTCATAGGCTACAGTCCAAGGATCTCTCGCTGTGCCACAGTATGATTCCACTGGGATCTTGTACAATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACTTGGCCTAGCTTCACTGACATTCATCCGTTTGCACCAACTGAACAGGCTCAAGGTTATCAGGAAATGTTCCAAAATTTGGGGGAACTGTTGTGTACCATCACTGGCTTTGACTCCTTTTCTTTGCAACCTAATGCTGGTGCTGCTGGAGAATATGCTGGACTGATGGTTATTCGTGCATATCATATGGCAAGAGGAGACCACCACCGCAATGTATGCATTATACCTGTGTCAGCACATGGAACTAATCCTGCTAGTGCTGCTATGTGTGGAATGAAAATTGTTCCTGTTGGAACTGATGCCAAAGGAAACATCAATATTGAAGAGTTGAGGAAGGCTGCTGAAACACATAGGGACAACTTATCTGCGCTTATGGTAACATATCCTTCAACCCACGGTGTTTATGAAGAAGGGATTGATGAGATATGCAAGATTATTCATGATAATGGAGGCCAAGTGTATATGGATGGGGCTAACATGAATGCACAGGTGGGACTTACAAGTCCTGGTTGGATCGGAGCAGATGTTTGCCATCTCAATCTCCATAAAACATTTTGCATCCCTCATGGAGGTGGCGGCCCAGGCATGGGTCCTATTGGTGTAAAGAAACACCTGGCACCATTTTTACCATCTCATCCTGTGGTACCCACTGGTGGCATTCCTGCCCCTGACAAGTCTCAACCACTTGGTACAATTTCTGCTGCTCCTTGGGGCTCGGCACTCATATTGCCCATCTCTTACACTTATATAGCCATGATGGGCTCTCAAGGACTCACCGAAGCATCAAAGATAGCCATTCTGAATGCTAACTACATGGCTAAGCGATTGGAGAATCATTACCCCATTCTTTTCCGTGGAATCAATGGAACAGTTGCTCACGAATTCATTGTTGACTTAAGAGGCTTTAAGAATACTGCCGGGATAGAACCTGAAGATGTTGCAAAGCGCCTTATGGACTATGGGTTCCATGGACCAACAATGTCATGGCCTGTGCCTGGCACTCTCATGATTGAACCTACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGTTTTGTGATGCTCTTATTTCCATTAGGGAAGAAATTGCCCATATTGAGAATGGAAAAGCTGATATTCACAACAATGTACTCAAGGGAGCCCCTCACCCACCGTCACTGCTGATGGGAGATGCATGGACAAAACCATACTCTAGGGAATATGCAGCCTTCCCAGCTTCCTGGCTCCGTATTTCAAAGTTCTGGCCTTCCACAGGACGTGTTGACAATGTGTACGGTGACCGCAACCTCATCTGCACTCTTCTCCCAGCGTCACAGGCTGAGGAAGAACAAACAGCTGCCACCGCCACTGCCTAG 3165 0.4597 MERARRLANRAILKRLVSEAKQCRQNESLLNSSTPVLYTPSRYVSSLSPSALSRGFKAENLLGRNLSRNVGFGVGFQTRSISIEALKPSDTFPRRHNSATPEEQSKMAQSCGFDNLDSLIEATVPKSIRLKEMKFGKFDEGLTESQMIEHMKYLASKNEVFKSYIGMGYYNTHVPSVILRNIMENPAWYTQYTPYQAEISQGRLESLLNFQTMITDLTGLPMSNASLLDEGTAAAEAMSMCNNIQKGKKKTFIIANNCHPQTIDICKTRADGFNLKVVTADLKDIDYKSGDVCGVLVQYPGTEGEILDYGEFIKTAHAHEVKVVMATDLLALTVLKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSMDSSGKTALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKSIAQRVHGLAGVFALGLKKLGTVDVQNLPFFDTVKVKTANALAIAEAAKKSEINLRVVDGNTITVSFDETSTLKDVDELFKVFAGGKPVSFTAESLASNVQTAVPSGLIRESPYLTHPIFNTYHTEHELLRYIHRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFTDIHPFAPTEQAQGYQEMFQNLGELLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHMARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVPVGTDAKGNINIEELRKAAETHRDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPDKSQPLGTISAAPWGSALILPISYTYIAMMGSQGLTEASKIAILNANYMAKRLENHYPILFRGINGTVAHEFIVDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAHIENGKADIHNNVLKGAPHPPSLLMGDAWTKPYSREYAAFPASWLRISKFWPSTGRVDNVYGDRNLICTLLPASQAEEEQTAATATA 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1751 1054 CDD GDC-P 564 959 IPR020581 GO:0004375|GO:0006546
Glsi08g1751 1054 FunFam glycine dehydrogenase (Decarboxylating), mitochondrial 603 842 - -
Glsi08g1751 1054 Gene3D Aspartate Aminotransferase, domain 1 164 517 IPR015422 GO:0003824
Glsi08g1751 1054 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 852 990 - -
Glsi08g1751 1054 CDD GDC-P 144 521 IPR020581 GO:0004375|GO:0006546
Glsi08g1751 1054 Pfam Glycine cleavage system P-protein 95 521 IPR020581 GO:0004375|GO:0006546
Glsi08g1751 1054 Pfam Glycine cleavage system P-protein 532 814 IPR020581 GO:0004375|GO:0006546
Glsi08g1751 1054 Gene3D Aspartate Aminotransferase, domain 1 856 990 IPR015422 GO:0003824
Glsi08g1751 1054 NCBIfam aminomethyl-transferring glycine dehydrogenase 95 1036 IPR003437 GO:0004375|GO:0006544
Glsi08g1751 1054 SUPERFAMILY PLP-dependent transferases 556 1037 IPR015424 -
Glsi08g1751 1054 Coils Coil 711 731 - -
Glsi08g1751 1054 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 86 1043 IPR003437 GO:0004375|GO:0006544
Glsi08g1751 1054 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 175 435 - -
Glsi08g1751 1054 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 77 1043 IPR020581 GO:0004375|GO:0006546
Glsi08g1751 1054 FunFam Glycine cleavage system P protein 428 517 - -
Glsi08g1751 1054 Gene3D - 175 435 IPR015421 GO:0003824
Glsi08g1751 1054 Gene3D - 603 855 IPR015421 GO:0003824
Glsi08g1751 1054 SUPERFAMILY PLP-dependent transferases 95 521 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1751 Glsi-ChrGlsi08 12456339 12461814 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0506 10 3222873 3228078 Glsi08g1751 08 12456339 12461814 CCT
Glsi08g1751 08 12456339 12461814 Glsi08g1751 08 12456339 12461814 ECH