Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1546 ATGGGTAAAGGCTACGGAGAGCAGCGTGATATGATCCCCATAGACTTTTCTTCAGCGAGGAGCTTACCTGATTCTCATGCATGGGGAGAATATGATGATGAGATTAATAATGGAGGTGGTGGGTCGTCATCCATACCCATCATCGACCTCGTGGATCCTAATGCCGTGGAACTGATAGGCCATGCATGCGAGAACTGGGGAACCTTCCAATTGAAGAACCATGGAATACCCTTGAGCCTTATTGAAGAGGTAGAGGCAGAGGCCAAGAGCCTCTTCGCTCTCCCCGCCCACCAAAAGTTGAAAGCCTTAAGATCTCCCACTGCCTTCACCGGATATGGCACAGCTCTTATATCACCATTCTTCCCCAAGTACATGTGGCACGAAGGCTTCACCATCATGGGTTCTCCCTCTCGTGATGCTCATAAGATTTGGCCTAATCATCATGCCCGCTTTTGTGATATAATGGAAAATTATCAGAAGCAAATGAAGCAACTAGCGGAGCAACTAACAAGCTTAATCTTCAAGTTCTTGGGCATTTCTGAAGAAGAAAAGAAGTGGGATGGTTCGAGTTCAAGCAAGAGCTCAGCAGCTCTTCAACTGAATTCGTACCCATGCTGTCCAGACCCAGAGCGAGCCATGGGCCTAGCCCCACACACAGATACCTCGCTTCTCACAATCCTCCACCAAAGCCAAACCTCCCAAGCTCACCTCCAAGTCTTCAAGCAAGGAGTAGGCTGGGTTCGGGTGCACCCAAACCCAAATGCACTCGTCGTCAACACTGGGGACATTCTCCACATAATCTCTAACGCAAGGATTCCTTGTGTGCTTCACCGTGTCACCGTGAATAGGAACCATCAAAGATATTCCATTGCTTATTTCTATGGGCCGCCTTCAGATTATCTCATGACTCCATTACCCACCGCGCTTTCCAACTCTCCACCTCGTTTTTGTCCTCTCACCGTGAGGGACTACGTCGCCATCAAGGCCAACAATCTAGGGGACGCACTTTCTTCCATTGCCACTTAG 1026 0.4903 MGKGYGEQRDMIPIDFSSARSLPDSHAWGEYDDEINNGGGGSSSIPIIDLVDPNAVELIGHACENWGTFQLKNHGIPLSLIEEVEAEAKSLFALPAHQKLKALRSPTAFTGYGTALISPFFPKYMWHEGFTIMGSPSRDAHKIWPNHHARFCDIMENYQKQMKQLAEQLTSLIFKFLGISEEEKKWDGSSSSKSSAALQLNSYPCCPDPERAMGLAPHTDTSLLTILHQSQTSQAHLQVFKQGVGWVRVHPNPNALVVNTGDILHIISNARIPCVLHRVTVNRNHQRYSIAYFYGPPSDYLMTPLPTALSNSPPRFCPLTVRDYVAIKANNLGDALSSIAT 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1546 341 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 45 326 - -
Glsi08g1546 341 Pfam non-haem dioxygenase in morphine synthesis N-terminal 45 146 IPR026992 -
Glsi08g1546 341 Coils Coil 155 175 - -
Glsi08g1546 341 FunFam Gibberellin 3-beta-dioxygenase 1 10 327 - -
Glsi08g1546 341 SUPERFAMILY Clavaminate synthase-like 14 332 - -
Glsi08g1546 341 Gene3D - 17 332 IPR027443 -
Glsi08g1546 341 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 193 296 IPR005123 -
Glsi08g1546 341 Pfam 2OG-Fe(II) oxygenase superfamily 198 296 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1546 Glsi-ChrGlsi08 11159705 11160840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1546 45 324 Glycosyltransferase AT5G59530 31.208 1.30e-32 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1546 08 11159705 11160840 Glsi10g0743 10 4709029 4710718 CCT