Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1541 ATGCTTAAGCAATTCCTCAGTAAGCTTCCTCGGAAGTCATCCAAATCCGAGGCGGAGGAGTCATATGGGGACGACTCCTCACGTTCCAGCTCCGTCGCTTCACCCCGCGTCACCGGCAAGGCTCATCGGTCACAAGGTGCGAGTTCTTCCACTCGATCCAATGCTGTGAAACGCACTTCTTCGTCGGCGGTTTTTCCAGCGAGTGTTGTGTCTGGGATTGAACCCTTGGTGCCGTTCAAAGATGTGCCCAATGCGGAGAAGATGAACCTGTTTGTGAGCAAGCTGAGCCTTTGTTGTGTTACATTCGATTTTACTGACCCCGGTAAGAATATCGCTGAAAAAGATGTCAAAAGGCAAACTTTGCTTGAACTTGTCGATTTTGTCGCTTCTGGGTCGATGAGATTCAGTGAACCTGCTATATTTGCTATGAGCAGAATGTGTGCCATAAATCTCTTTAGGGTTTTCCCGCCTCACTATAGCCCTAATAGGGGTGGTGCTGGTGGTGAGAATGATGATGATGAGCCAATATTTGATCCTGCTTGGCCACATTTACAGATTGTGTATGACTTGCTGATTAAATTTATTACTTCTCCGTGTCTTGATGCTAAGGTGGCGAAGAAGTATATCGATCATTCATTTATTTCAAGACTGCTTGAATTGTTTGATTCAGAGGATCCAAGAGAAAGAGACTGCTTGAAGACTATTGTGCACAGGGTTTATGGGAAGTTCATGGTGCATAGGCCCTACATTCGGAAATCTATTAACAACATATTCTACCGGTTTGTGTTTGAGTCCGAGAAACACAATGGCATTGCTGAGTTACTAGAGATTTTTGGGAGCATAATTAGTGGATTTGCCCTTCCTTTGAAAGAGGAACACAAAATATTCTTATGGAGGGTGTTGATTCCCTTGCACAAGCCAAAATCTATGGGGGTTTATTTCCAGCAATTGTCATATTGTGTTACACAGTTTGTAGAGAAGGAGCCAAAGCTAGCCAGCACTCTGATAAGGGGTTTGCTAAAATACTGGCCCATAACAAATAGTCAGAAGGAGATGTTGTTCTTGGGTGAACTGGAAGAGGTTTTGGAAGCAATCAACATGGTAGAGTTTCAGAGGGTCATGGTCCCATTGTTTTGGCGGATTGGTTGCTGCATCAACAGCTTTCACTTTCAAGTAGCTGAAAGGGCCCTTTTCTTATGGAACAACGACCATATTGTCAACTTGATTGCGCATAACCGTCAGGTGATCCTGCCCATTATATTTCCAGCTTTAGAGAGGAACTCTCAGAGCCATTGGAACCAGGCAGTGCTCAACTTAACTCATAATATTAGAAAGATGTTCTTAGAGATGGATGAGAAGCTCTTTCTGTCTTGTCATTCTCACTTTAAGGAGGAAGAAGCATTTATAAGCTTGGCAGCTGAGAAGCGAAAAGAAGCATGGGAACGACTAGAGCGTGCGGCCAGTCTCCAGCCCGTAGTGGGAAATACCGCTGTTTTAGTGTCCCCCTTGATAACCTGA 1518 0.4453 MLKQFLSKLPRKSSKSEAEESYGDDSSRSSSVASPRVTGKAHRSQGASSSTRSNAVKRTSSSAVFPASVVSGIEPLVPFKDVPNAEKMNLFVSKLSLCCVTFDFTDPGKNIAEKDVKRQTLLELVDFVASGSMRFSEPAIFAMSRMCAINLFRVFPPHYSPNRGGAGGENDDDEPIFDPAWPHLQIVYDLLIKFITSPCLDAKVAKKYIDHSFISRLLELFDSEDPRERDCLKTIVHRVYGKFMVHRPYIRKSINNIFYRFVFESEKHNGIAELLEIFGSIISGFALPLKEEHKIFLWRVLIPLHKPKSMGVYFQQLSYCVTQFVEKEPKLASTLIRGLLKYWPITNSQKEMLFLGELEEVLEAINMVEFQRVMVPLFWRIGCCINSFHFQVAERALFLWNNDHIVNLIAHNRQVILPIIFPALERNSQSHWNQAVLNLTHNIRKMFLEMDEKLFLSCHSHFKEEEAFISLAAEKRKEAWERLERAASLQPVVGNTAVLVSPLIT 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1541 505 SUPERFAMILY ARM repeat 89 482 IPR016024 -
Glsi08g1541 505 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 488 IPR002554 GO:0000159|GO:0007165|GO:0019888
Glsi08g1541 505 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 83 486 - -
Glsi08g1541 505 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 78 487 IPR002554 GO:0000159|GO:0007165|GO:0019888
Glsi08g1541 505 MobiDBLite consensus disorder prediction 25 55 - -
Glsi08g1541 505 PIRSF PP2A_B56 3 501 IPR002554 GO:0000159|GO:0007165|GO:0019888
Glsi08g1541 505 MobiDBLite consensus disorder prediction 1 55 - -
Glsi08g1541 505 MobiDBLite consensus disorder prediction 10 24 - -
Glsi08g1541 505 Gene3D - 83 486 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1541 Glsi-ChrGlsi08 11131143 11133462 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0748 10 4735572 4738174 Glsi08g1541 08 11131143 11133462 CCT
Glsi08g1541 08 11131143 11133462 Glsi08g1541 08 11131143 11133462 ECH