Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1244 ATGGCCGAGGAGACAAAAGAAGATCAAGAAAAGGTTATGGGAATGCTTCGTTTTCAGGCTAGAACGCAATTTACTGCTGGGAAAGTGGAGGACGTTACTCCTTATGTTAAGACTACTACAAGGGAGCATACACATTGTGTTGTTGGGAAAGAGTTGGAACTTGTCGGCCGGTGGATAAGAAGATGCTCTGGTTTGATCAGGTACCTTCAGGCTTCAACTGTAAGAAAGGGCAAGAACAAGGTGGAGAATAAATTGGGTTGTGGTTTCATGGGCAGTATCTTCCAACTCAGAAGCTATAAACTGAGAAAATCATGTGTTCATTCACTACCAATGAGGGCCATTAACAATGTACAGATCGATCACAGCAAACATGAATCCAAGAGGCCTCCAAATCATGAGCTTCCGACCGGAAAAAGAACCTCTGGTCATCCAACACCCCCTACTTACCGAAACAGTCAAAATCGGAGACCTTCAGACGCTGCAAGAAGCTCGACGTCATCCTCGGGTAATTCAAGCCATACCAAGATTCAACAGAACCAGAACTTGAATGATGAGAGGAAGATACAGACAGAGCCCACCGCCAACTCTCTGGAGCTCGCTAGGATAAGTACTAATTACCGGCGAGAAAACGAGAACAAATCCCCGGTTAAAGACTTGGGTACCTTGAAACTTACTGGCAATTTGCTAGTAAATAACAGCCCAAGATCTAGTGCCATGAGTCTGGAAAGCCTTCCTAAGAATAAAGATTTGAACTCTGTGCTCAATTCTCACAATAACAGCAGTTTAGGCGTAATGGGGAATATCATGAGGAAGAACACTGATGAGCTTGCGCAATTCCGAAGTCAGAGGAACAGAGTGGACCCTGAGGTGTTGAAGTCAATGGGAAATGAGGCATACAAGCAGGGGAGATTTGCAGAGGCTTTGGTTTTGTATGAGCGAGCGATTGTTATTGATTCACAGAAGGCAACGTATCACTGCAACAAGAGTGCAGCTTTAATAGGCTTAGGTCGGCTTCTGGAAGCCACCGTTGAGTGCCAGGAAGCCATCCGGCTGGAACCTTCTTATAACAGAGCCCACCACCGTTTGGCAACCATATATCTCAGATTGGGTGAGGCAGAAAAGGCACTAAATTGCAATCACGCAACCCCATATTCTGATTCTGTACTCGCTTTCCAAGCTCAGGCTCTTCAGAGTCACCTTAACAAATGCGCTGAAGCTCGGAAAGTCAACGAATGGGATGCTATACTAAAGGAAACACAGTCTGCAATATTATTAGGTGCTGATTCAAGTCCGCAGGTTTATGCTCTACAAACGGAAGCCTTACTTAAACTCTTCAGACATCAAGAGGCATATGCTACCTATGAGAAAATGCCGAAATTTGCACTTAATTGGTGTAGTAAGTTATTTGGTCTTGCTCGTAGTGCTTACCTGTTGATGATAGGGGCACAGGTCTACTTAGCAGCTGGCAGGTTTGAGGAAGCCGTGACAGCTGCTCAGCAAGCAGCTCAACTCGATCCAAGCGACAAAGAGGTGAATACTGTGGTAAAGAGGGCCAGAGCAGTGACATCAGCCAGAATGAGTGGTAACTCACTGTTCAAGGCATCAAAATTTATGGAAGCATGTAGTGTATATAACGAAGGACTAGAGCATGATCCATACAACTCAGTTCTTCTCTGCAACAGAGCAGCATGTCGTTCAAAGTTATTCCAATTTGAGAAGGCAATTGAAGATTGTAATGCAGCCCTTGCAGTTCAGCCTAGTTATAGCAAGGCACGGTTACGGAGGGCGGACTGCAATGCTAAGTTGGAAAGATGGGAAGCTGCCATTCAAGACTATGAGATGCTATTAAGAGAAAAGCCAGGGGATGAAGAGGTGGCTAGGGCTCTGTTTGAGGCCCAGCTCCATCTCAAGATGCTGCGTGGTGAAGATATTAAGGACTTCAAATTTGGCTCAAATTTGGTTTTTATCTCCAGCAATGATCGGTTCAGACATTATGTAACCTCACCTGGGATGTCTGTGGTGCTCTTTTGCAACAAGGCAACCCACAAGCAAGTATTTCTAGTGTTGGAGCAAACGTGCAAGAGATTTCCATCCGTTAATTTCCTCAAGGTGGAGATCGAGGACCACCCCTACTTAGTGAAATCAGAAGGTGTGAGCTCTGTCCCAGCCTTCAAAATATATAAGAACGGTTCAAGGGTCAAAGAAATTCCAGGCAACAAGCACGAGCTGTTAGAAAGATCAGTAAAATTGTATAGCAGCTGA 2262 0.45 MAEETKEDQEKVMGMLRFQARTQFTAGKVEDVTPYVKTTTREHTHCVVGKELELVGRWIRRCSGLIRYLQASTVRKGKNKVENKLGCGFMGSIFQLRSYKLRKSCVHSLPMRAINNVQIDHSKHESKRPPNHELPTGKRTSGHPTPPTYRNSQNRRPSDAARSSTSSSGNSSHTKIQQNQNLNDERKIQTEPTANSLELARISTNYRRENENKSPVKDLGTLKLTGNLLVNNSPRSSAMSLESLPKNKDLNSVLNSHNNSSLGVMGNIMRKNTDELAQFRSQRNRVDPEVLKSMGNEAYKQGRFAEALVLYERAIVIDSQKATYHCNKSAALIGLGRLLEATVECQEAIRLEPSYNRAHHRLATIYLRLGEAEKALNCNHATPYSDSVLAFQAQALQSHLNKCAEARKVNEWDAILKETQSAILLGADSSPQVYALQTEALLKLFRHQEAYATYEKMPKFALNWCSKLFGLARSAYLLMIGAQVYLAAGRFEEAVTAAQQAAQLDPSDKEVNTVVKRARAVTSARMSGNSLFKASKFMEACSVYNEGLEHDPYNSVLLCNRAACRSKLFQFEKAIEDCNAALAVQPSYSKARLRRADCNAKLERWEAAIQDYEMLLREKPGDEEVARALFEAQLHLKMLRGEDIKDFKFGSNLVFISSNDRFRHYVTSPGMSVVLFCNKATHKQVFLVLEQTCKRFPSVNFLKVEIEDHPYLVKSEGVSSVPAFKIYKNGSRVKEIPGNKHELLERSVKLYSS 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1244 753 SUPERFAMILY Thioredoxin-like 574 742 IPR036249 -
Glsi08g1244 753 Pfam TPR repeat 295 330 - -
Glsi08g1244 753 MobiDBLite consensus disorder prediction 118 134 - -
Glsi08g1244 753 ProSiteProfiles TPR repeat profile. 475 508 IPR019734 GO:0005515
Glsi08g1244 753 Gene3D Glutaredoxin 649 752 - -
Glsi08g1244 753 CDD TRX_family 662 745 - -
Glsi08g1244 753 SUPERFAMILY TPR-like 288 510 IPR011990 GO:0005515
Glsi08g1244 753 SUPERFAMILY TPR-like 526 637 IPR011990 GO:0005515
Glsi08g1244 753 Pfam Tetratricopeptide repeat 570 622 - -
Glsi08g1244 753 Pfam Tetratricopeptide repeat 482 555 - -
Glsi08g1244 753 Gene3D Tetratricopeptide repeat domain 286 640 IPR011990 GO:0005515
Glsi08g1244 753 ProSiteProfiles TPR repeat profile. 288 321 IPR019734 GO:0005515
Glsi08g1244 753 MobiDBLite consensus disorder prediction 141 203 - -
Glsi08g1244 753 MobiDBLite consensus disorder prediction 117 218 - -
Glsi08g1244 753 Pfam Thioredoxin 684 744 IPR013766 -
Glsi08g1244 753 Coils Coil 595 615 - -
Glsi08g1244 753 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 79 749 IPR044534 -
Glsi08g1244 753 SMART tpr_5 555 588 IPR019734 GO:0005515
Glsi08g1244 753 SMART tpr_5 521 554 IPR019734 GO:0005515
Glsi08g1244 753 SMART tpr_5 475 508 IPR019734 GO:0005515
Glsi08g1244 753 SMART tpr_5 589 622 IPR019734 GO:0005515
Glsi08g1244 753 SMART tpr_5 288 321 IPR019734 GO:0005515
Glsi08g1244 753 SMART tpr_5 322 355 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1244 Glsi-ChrGlsi08 9069473 9078239 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1081 10 7248383 7250988 Glsi08g1244 08 9069473 9078239 CCT
Glsi08g1244 08 9069473 9078239 Glsi08g1244 08 9069473 9078239 ECH