Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0887 ATGGGTGAGGAAGCTAAACAGGAACAACTCAAGGCAGAGGCAAAGTCAGAGGAAAAGCCAGCAGATGAGAAGAAAGAAGAGAAAGCAGAGGAAAAGCCAGCAGAGGAGAAGAAAGAAGAGAAAACAGAGGAAAAGCCAGCAGAAGAGAAGAAGGAAGAGCCTAAACCACCATCGCCATGTGTTCTGTCTGTGGACCTGCATTGTGTGGGATGTGCCAAGAAAATTGAGAAATCTATTATGAAAATGAGAGGAGTTGAAGGAGTGGTAATGGATACGGCTAAAAATGAAGTTACCATAAAGGGAATAGTGGAACCCCAAGCAATCTGCAACAAAATTACGAAGAAAACAAGGAGAAGAGCCAAAGTTATTTCTCCATTGCCAGCTGCAGAAGGAGAACCTATTCCAGAAGTTGTTACCTCTCAGGTTAGTGGGCCAGTTACTGTGGAACTTAATGTAAACATGCACTGTGAGGCCTGTGCTGAGCAACTCAAGAGGAAGATACTCAAAATGAGAGGAGTGCAAACGGCAGTGACAGAGCTTAGCACAGGGAAGGTTACTGTGACTGGAACCATGGATGCCAACAAGCTAGTGGAGTATGTCTATAGACACACCAAAAAGCAAGCCAAGATAGTTCCACAGCCAGAGCCTGAACCAGAGAAGAAAGAAGAAACTAAAGAACCTGAGAAACCAGCGGAAGAGGCTAAACCAGAAGAGAAAAAGGAAGAGAGCACAGAGAAGAAAGAAGAGGAGAAACCAGCAGAGGAACCCAAGAAAGATGAAGCTGGTGAAAATAAGAGTGAGAATAAAGAAGAAAAGAGTGGTGAAGAAGGCAAAGAAGAGGTCAAGAAAGAAGAGGGTGATCAAAATGGGATGGTCATCGTTGATGAGGATGGCATAAAGAGGATGATGTACTATTACCAGCCACTCTACGTGATCGAACGAATCCCACCTCCTCAGCTCTTCAGCGATGAAAATCCCAATGCATGCTGCATTTCATGA 999 0.4434 MGEEAKQEQLKAEAKSEEKPADEKKEEKAEEKPAEEKKEEKTEEKPAEEKKEEPKPPSPCVLSVDLHCVGCAKKIEKSIMKMRGVEGVVMDTAKNEVTIKGIVEPQAICNKITKKTRRRAKVISPLPAAEGEPIPEVVTSQVSGPVTVELNVNMHCEACAEQLKRKILKMRGVQTAVTELSTGKVTVTGTMDANKLVEYVYRHTKKQAKIVPQPEPEPEKKEETKEPEKPAEEAKPEEKKEESTEKKEEEKPAEEPKKDEAGENKSENKEEKSGEEGKEEVKKEEGDQNGMVIVDEDGIKRMMYYYQPLYVIERIPPPQLFSDENPNACCIS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0887 332 SUPERFAMILY HMA, heavy metal-associated domain 142 202 IPR036163 GO:0046872
Glsi08g0887 332 MobiDBLite consensus disorder prediction 1 59 - -
Glsi08g0887 332 ProSiteProfiles Heavy-metal-associated domain profile. 145 209 IPR006121 GO:0046872
Glsi08g0887 332 SUPERFAMILY HMA, heavy metal-associated domain 62 115 IPR036163 GO:0046872
Glsi08g0887 332 ProSiteProfiles Heavy-metal-associated domain profile. 57 120 IPR006121 GO:0046872
Glsi08g0887 332 Coils Coil 24 44 - -
Glsi08g0887 332 CDD HMA 61 114 IPR006121 GO:0046872
Glsi08g0887 332 Gene3D - 58 121 - -
Glsi08g0887 332 Gene3D - 144 210 - -
Glsi08g0887 332 MobiDBLite consensus disorder prediction 1 56 - -
Glsi08g0887 332 CDD HMA 149 189 IPR006121 GO:0046872
Glsi08g0887 332 MobiDBLite consensus disorder prediction 207 290 - -
Glsi08g0887 332 Pfam Heavy-metal-associated domain 151 198 IPR006121 GO:0046872
Glsi08g0887 332 Pfam Heavy-metal-associated domain 62 115 IPR006121 GO:0046872
Glsi08g0887 332 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 9 11 332 IPR044258 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0887 Glsi-ChrGlsi08 6591147 6593062 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1425 10 9629483 9636514 Glsi08g0887 08 6591147 6593062 CCT
Glsi08g0887 08 6591147 6593062 Glsi08g0887 08 6591147 6593062 ECH