Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1736 ATGATGGAACGCAAGAAAACGCTCACCATGAACTGGGACGGCCTCCAAGACGACGACGACGACGATCACTTCTTTGAGAGCTTCGATCGCGCCTCCTCCGCCGTTCCCCTCGATTTGGCTTCTTCCTCCGATGAAGATGAGGACTTTGAAGATAGCCGCATGTCCTTCGCCTCCACCATGTCCTCCGTCCAATCTACGAGATTTAGAGCGCTTTCGCGAAAGGGGTCAGCCACCGTAGCAGTAGCGGTCCCTAATTTTGACTACGACATATGGATGGCCGATCCTGGATCGATCACAGAACGCAGGAAACGATTGCTTCATGGGATGGGTCTTGATGAAAATAAAGAGCTCTTGAAGGCCGCAAGCGTGGCGCTTGGTCGCGCTATAACGAAGAAGTTCGAAAATGTTCAGGATTCTTCTGGTTCAACCCTAGATCCTTCTTTTGGTGCTCCTCCTCCTGCTTCTGCTGCAACAACCACGCCTGTTTCAGACGAACCCAAAACAGAGGCTTCCCCTGTTCCAATCGTTCTGGTCCGATCACGTTCAGATGGAGACATCGATATGTCTTCCATCAACAAAATCAGAAATGAGGAATTCATGGGCAAGATCTCAAAGCAGCGTCTCACAAGAACATCCTCAGAGATCGCTATGCCTCGTCCTCGGATATGTCCCTACACGTACTGGAGCGGAGCATCCGAGAAAGAAGCTACTGCGGCAACAGGGGAACCAAATCGGCATGGGAAGAAATTATCATCAATAGTATCGAATTCAGGATTTGGGTCTTTTTTTCTAATCAAGAATCTGGATACTGGGAAGGAGTTCATCGTCAATGAGTATGGCGAAGATGGGATGTGGAATAGGCTGAGCGATTTGCAGACAGGTAAGAAGCTAACAATGGAGGAATTCCAGAAGACCGTTGGGCATTCCCCTGTTGTTCATGAGCTCATGAGGCGAGAATCCGTGGCTAGAAACCGAAGCGATGGTGGGGGTCATGAGAGGAAGCTCAGTCTCACGGCTAATAACTACATCTCCAAGAGCTTGAGAATGATGAGCAAGAGAACAGGGGCTGCTCTGTTGAAGAATATAAAAGGCGTGGCAAGTGGGTTCATTGGTGAGAGAGAAAGAGACAGAGAAACTCAACCTCCGTCATTGTCATTACCTTTACCGTTTCAAGCACAAGTGACGGAACAAAAATCCGGCAAGAATGAATGGGTGAGAGTGAGGCAGAGTGGGAAGTCTCATAAGGAGTTTTCAGCTTTACACATGTGTCAAGAATTTCAGGCTCATGAAGGGTGCATTTGGACCATAAAGTTCAGTTGGGATGGGCATTTTCTGGCTAGTGCTGGAGAAGATAAAGTGATTCATATTTGGGAAGTGCAGGAGTGGGAGGTTACGTCGTTGACACCAGAAGAAGGGAACGCTACTCCGATTCATCCATCGATGCTTGCTTCATCATCCCCAGATCGAAATGGGTCAGCAGAGGCTACTCCGCCATTGCCGAATGAGAAGAAGAAAAAGGGGAAATCTGGAAACAAAAAAGCGAATGGGATTCCTGAGTATGTTCATGTGCCTGAAACTGTGTTCTCCCTTTCTGAGAAACCATATTGCTCTTTCGAAGGTCATTTGGATGATATTTTGGACTTGTCTTGGTCCAAATGTCAGCTACTCCTTTCGTCTTCAATGGATAAAACAGTGAGATTATGGGACATGGAAAGCAAGATGTGCTTGAAGATGTTTGCCCATAATGACTATGTAACATGCATACAGTTCAATCCTATAGACGACGATTATTTCATAAGTGGCTCCCTTGATGCTAAGATTAGAATATGGAGCATCCCTCATCGACAGGTCGTGGATTGGTGTGACGTCCATGAAATGGTCACTGCAGTTTCTTACACCCCTGATGGTCAGGCTGCTCTTGTTGGTACACATAAAGGGAGTTGTGGCATGTATAGCATAGAAGATTGCAAATTAACTCAAACAGGCGTAATTGAGTTACAAAAAAAGAAATCTCAGCTAAAAAAGATCACTGGTTTTCAGTTTGGACCAGGTAATCCACCAGAAGTGCTTGTCACTTCAGCAGATTCCAGGATAAGAATTGTAGATGGCACGAAAGTTGTTCATAAGTTCCAAGGTTTTCGAAATGCAACTAGTGGAATTGCAGCTTCATTTAGTCCATGTGGAAGACATGTCATTAGCGCAAGTGAGGATTCTCACGTTTATGTTTGGAAGTACGATGAAGCTCGACAAGTAAGCAATGGAAAAAATAGACACTTAGTTGTTGCCAGATCTTACGAGCAGTTCCAATGTAAGGATGTTTCAGTGGCAGTACCATGGCCTTTTACCTTGAAGGGTGACCCCCCACCAGTCCCAGTTCGTCACTCCAAAAGGAATTCAAAACGCTCTGGAACGACCCAATCACCTTCTTCTTGTGAATCTCTAGCCAGAGAAGATAACAATTCTCCTGCAAATAGTAAGAGTATGTTACCACCTCTTCCCAACAAGAAAGGCAATAATCAAGTCACAGAGGAAGACCCTTCAACAATTTCCAACACAGAATCCGGGGTTGGAGATTCCTTTGCAAACAGTTCTAGAATGTCGCCGCCTATTCCTAAGAAAAGTACAGAAAGTAGTACTGCCTCCGCTTCCCCAGAGGAAGACCCTGCGGCGATCTCGAGCACGGAACCTGGAATTGGTGCCAATCTGCCCGAGGAAGACCTCGAGGTGATTTCACGCACGGAATCTGGGATTGGAGATTCGTTTGCTTCGGATTCTTCCTCGATGAGGGACGATGATCCATCTTCTATATCAGCTACAGGTGCCAATTCAGCGTCCTCTTCTTGGTCTGCGTCTTGGTCATGGTTTGACAGTGGCCACGCTACTTCAACAAGTCATCCTGCAGCATGGGGCTTGGTGATTGCCACAGCCAGCTTTGGAGGTGAAATCAGGTGCTATCAGAATTTTGGGCTGCCCAGAAGATTAAGCAGGCAGGGCAGTCTTTTTGGAGGCCCAATAATTTAA 3021 0.4654 MMERKKTLTMNWDGLQDDDDDDHFFESFDRASSAVPLDLASSSDEDEDFEDSRMSFASTMSSVQSTRFRALSRKGSATVAVAVPNFDYDIWMADPGSITERRKRLLHGMGLDENKELLKAASVALGRAITKKFENVQDSSGSTLDPSFGAPPPASAATTTPVSDEPKTEASPVPIVLVRSRSDGDIDMSSINKIRNEEFMGKISKQRLTRTSSEIAMPRPRICPYTYWSGASEKEATAATGEPNRHGKKLSSIVSNSGFGSFFLIKNLDTGKEFIVNEYGEDGMWNRLSDLQTGKKLTMEEFQKTVGHSPVVHELMRRESVARNRSDGGGHERKLSLTANNYISKSLRMMSKRTGAALLKNIKGVASGFIGERERDRETQPPSLSLPLPFQAQVTEQKSGKNEWVRVRQSGKSHKEFSALHMCQEFQAHEGCIWTIKFSWDGHFLASAGEDKVIHIWEVQEWEVTSLTPEEGNATPIHPSMLASSSPDRNGSAEATPPLPNEKKKKGKSGNKKANGIPEYVHVPETVFSLSEKPYCSFEGHLDDILDLSWSKCQLLLSSSMDKTVRLWDMESKMCLKMFAHNDYVTCIQFNPIDDDYFISGSLDAKIRIWSIPHRQVVDWCDVHEMVTAVSYTPDGQAALVGTHKGSCGMYSIEDCKLTQTGVIELQKKKSQLKKITGFQFGPGNPPEVLVTSADSRIRIVDGTKVVHKFQGFRNATSGIAASFSPCGRHVISASEDSHVYVWKYDEARQVSNGKNRHLVVARSYEQFQCKDVSVAVPWPFTLKGDPPPVPVRHSKRNSKRSGTTQSPSSCESLAREDNNSPANSKSMLPPLPNKKGNNQVTEEDPSTISNTESGVGDSFANSSRMSPPIPKKSTESSTASASPEEDPAAISSTEPGIGANLPEEDLEVISRTESGIGDSFASDSSSMRDDDPSSISATGANSASSSWSASWSWFDSGHATSTSHPAAWGLVIATASFGGEIRCYQNFGLPRRLSRQGSLFGGPII 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1736 1006 ProSiteProfiles Trp-Asp (WD) repeats profile. 426 467 IPR001680 GO:0005515
Glsi06g1736 1006 ProSitePatterns Trp-Asp (WD) repeats signature. 445 459 IPR019775 -
Glsi06g1736 1006 MobiDBLite consensus disorder prediction 136 173 - -
Glsi06g1736 1006 Pfam WD domain, G-beta repeat 575 611 IPR001680 GO:0005515
Glsi06g1736 1006 Pfam WD domain, G-beta repeat 534 569 IPR001680 GO:0005515
Glsi06g1736 1006 Pfam WD domain, G-beta repeat 707 744 IPR001680 GO:0005515
Glsi06g1736 1006 Pfam WD domain, G-beta repeat 425 457 IPR001680 GO:0005515
Glsi06g1736 1006 MobiDBLite consensus disorder prediction 916 944 - -
Glsi06g1736 1006 SMART WD40_4 614 652 IPR001680 GO:0005515
Glsi06g1736 1006 SMART WD40_4 666 702 IPR001680 GO:0005515
Glsi06g1736 1006 SMART WD40_4 572 611 IPR001680 GO:0005515
Glsi06g1736 1006 SMART WD40_4 531 569 IPR001680 GO:0005515
Glsi06g1736 1006 SMART WD40_4 703 744 IPR001680 GO:0005515
Glsi06g1736 1006 SMART WD40_4 419 458 IPR001680 GO:0005515
Glsi06g1736 1006 MobiDBLite consensus disorder prediction 801 888 - -
Glsi06g1736 1006 ProSiteProfiles Trp-Asp (WD) repeats profile. 538 578 IPR001680 GO:0005515
Glsi06g1736 1006 Gene3D - 514 779 IPR015943 GO:0005515
Glsi06g1736 1006 Gene3D - 389 492 IPR015943 GO:0005515
Glsi06g1736 1006 ProSitePatterns Trp-Asp (WD) repeats signature. 556 570 IPR019775 -
Glsi06g1736 1006 ProSiteProfiles Trp-Asp (WD) repeats profile. 723 753 IPR001680 GO:0005515
Glsi06g1736 1006 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 538 572 - -
Glsi06g1736 1006 ProSiteProfiles Trp-Asp (WD) repeats profile. 578 612 IPR001680 GO:0005515
Glsi06g1736 1006 MobiDBLite consensus disorder prediction 470 492 - -
Glsi06g1736 1006 MobiDBLite consensus disorder prediction 781 902 - -
Glsi06g1736 1006 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 426 460 - -
Glsi06g1736 1006 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 578 612 - -
Glsi06g1736 1006 SUPERFAMILY WD40 repeat-like 420 752 IPR036322 GO:0005515
Glsi06g1736 1006 PRINTS G protein beta WD-40 repeat signature 445 459 IPR020472 -
Glsi06g1736 1006 PRINTS G protein beta WD-40 repeat signature 598 612 IPR020472 -
Glsi06g1736 1006 PRINTS G protein beta WD-40 repeat signature 556 570 IPR020472 -
Glsi06g1736 1006 MobiDBLite consensus disorder prediction 470 516 - -
Glsi06g1736 1006 PANTHER WD REPEAT DOMAIN 44 17 991 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1736 Glsi-ChrGlsi06 64207200 64214581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1736 537 744 Miscellaneous Gene Families AT5G08390 24.766 2.87e-10 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1736 06 64207200 64214581 Glsi07g1776 07 59301527 59307907 CCT
Glsi06g1736 06 64207200 64214581 Glsi06g1736 06 64207200 64214581 ECH