Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0270 ATGGAGCAGTCTCTCTCCCTTCAAATTGAGCATGAATTTGTTCAGAACTCGGTAAGAGTGAAGTCTGTTGATCTGCATCCAACTGAGCCATGGATTCTTGTGGGTTTGTATTCAGGAACTATTTCCATATGGAACTATCAGACGAAGACCGAAGAAAAGTCTTTCAATGTCAGTGAATCGCCAGTCAGATCGGCGAAGTTCATAGCTCGCGAAAACTGGGTTGTTGCTGCAACTGATGACAAATTCATCCGTGTCTACAACTACGACAAAATGGAAAAGGTAATAGAATTTGAGGCTCATAAAGATTACATCAGGAGTGTGGCTGTGCATCCTTCTCTGCCATATGTGGTGTCAGCTTCTGATGACCAAGTTCTAAAGCTGTGGGATTGGAGAAAAGGTTGGGCATGCGTTGAGACCTTTGAAGGGAATTCACATTATGTGATGCAAGTTGCCTTAGATCCAAAGGATGCTGCTAGCTTTGCAAGTGCATCCCTTGATGGCACCTTGAAGATTTGGAATCTTAATTCCTCAACTCCAAATTTTACCTTGGAAGGACACTTGAAAGGGGTGAATTGTGTCGATTATTTCGAAAGCAATGATAAGCAATATCTATTAAGTGGTTCTGATGACCATACTGTTAAGGTCTGGAATTTTAATACTAAAAGCTGTGTACAAACACTAGAAGGACATGGAAACAATGTTACTGCAGTATGTGTTCATCCAGAGCTTCCTATAATAATAACAGCTTCAGAGGATGATACTGTTAAGATATGGGATGCACTCACTTATAGGCTTCAGACCACATTGCACTATGGTCTTGACAGAGTATGGAGTATTGCATACAAGAAAGGATCATATCAGCTTGCTTTTGGTTGTGACAAAGGATTCATCATGGTTACGATTAAGTGTTCTTCTCAAAACCTTCAAGCAGCCAAACAAGATTAA 945 0.4063 MEQSLSLQIEHEFVQNSVRVKSVDLHPTEPWILVGLYSGTISIWNYQTKTEEKSFNVSESPVRSAKFIARENWVVAATDDKFIRVYNYDKMEKVIEFEAHKDYIRSVAVHPSLPYVVSASDDQVLKLWDWRKGWACVETFEGNSHYVMQVALDPKDAASFASASLDGTLKIWNLNSSTPNFTLEGHLKGVNCVDYFESNDKQYLLSGSDDHTVKVWNFNTKSCVQTLEGHGNNVTAVCVHPELPIIITASEDDTVKIWDALTYRLQTTLHYGLDRVWSIAYKKGSYQLAFGCDKGFIMVTIKCSSQNLQAAKQD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0270 314 ProSitePatterns Trp-Asp (WD) repeats signature. 204 218 IPR019775 -
Glsi07g0270 314 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Glsi07g0270 314 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Glsi07g0270 314 PRINTS G protein beta WD-40 repeat signature 160 174 IPR020472 -
Glsi07g0270 314 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 259 - -
Glsi07g0270 314 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 226 IPR001680 GO:0005515
Glsi07g0270 314 SMART WD40_4 133 173 IPR001680 GO:0005515
Glsi07g0270 314 SMART WD40_4 6 45 IPR001680 GO:0005515
Glsi07g0270 314 SMART WD40_4 48 87 IPR001680 GO:0005515
Glsi07g0270 314 SMART WD40_4 220 259 IPR001680 GO:0005515
Glsi07g0270 314 SMART WD40_4 90 129 IPR001680 GO:0005515
Glsi07g0270 314 SMART WD40_4 176 217 IPR001680 GO:0005515
Glsi07g0270 314 Pfam WD domain, G-beta repeat 135 173 IPR001680 GO:0005515
Glsi07g0270 314 Pfam WD domain, G-beta repeat 93 129 IPR001680 GO:0005515
Glsi07g0270 314 Pfam WD domain, G-beta repeat 179 217 IPR001680 GO:0005515
Glsi07g0270 314 Pfam WD domain, G-beta repeat 16 45 IPR001680 GO:0005515
Glsi07g0270 314 Pfam WD domain, G-beta repeat 222 259 IPR001680 GO:0005515
Glsi07g0270 314 SUPERFAMILY WD40 repeat-like 6 299 IPR036322 GO:0005515
Glsi07g0270 314 FunFam Coatomer alpha subunit, putative 13 302 - -
Glsi07g0270 314 CDD WD40 19 281 - -
Glsi07g0270 314 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 182 IPR001680 GO:0005515
Glsi07g0270 314 Gene3D - 13 302 IPR015943 GO:0005515
Glsi07g0270 314 PANTHER COATOMER 8 304 - -
Glsi07g0270 314 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 129 IPR001680 GO:0005515
Glsi07g0270 314 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 129 - -
Glsi07g0270 314 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 220 - -
Glsi07g0270 314 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Glsi07g0270 314 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 140 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0270 Glsi-ChrGlsi07 1823697 1825928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0270 87 291 Miscellaneous Gene Families AT5G08390 26.699 8.00e-17 79.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0224 06 1516087 1528676 Glsi07g0270 07 1823697 1825928 CCT
Glsi07g0270 07 1823697 1825928 Glsi07g0270 07 1823697 1825928 ECH