Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0224 ATGCGATTCTGTGAGAGGAAACCCTCTCCCTTGAAACTGAGATGCAGAAGCATTGGTACTGCTAGTAGTTCTGCATCTTCTTGTACTGAAGAGACGTCTTCCAAGGTCAGTGAATCACCAGTCAGATCGGCAAATTTCACAGCTGGCAAAAGTTGGGTTGTGGCTGCAGCTGATGACAAATTCATTGGTGTCTACGAGTATGACAAAATGGCCAAGGTGAGGGATTATCATCACAGAAACTGTTTACAAACACTAGAAGAACATGAACTGACAAGTTGTAGCATTAGAGAAACATCGCGGTTTTCTTTTGAGAGTATGGAGTATTGGATTCAAGAAAGGATCATATCAGTAATTCTCTGCGCCTTAATTAACCACCAACATATAGAACAATTGCAGCTTCTCCTTCTGACTGGCAATCATCACTACTTCCTTCAGCCTCTCAGACTCGAAATTAAGCGAAAGCTTGCACAAAGGTCAGAAAGAGTAAAATCGGTGGATCTTCATCCAACAGAACCATGGATTCTGGCAAGTTTATACTCAGGAACTGTCTGTATTTGGAACTACCAATCTCAGACCATGGCCAAGTCTTTTGAGGTTACTGAGTTACCAGTTAGGTCGGCCAAGTTTATTGCACGCAAACAGTGGGTGGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAATCAAAGTTTTTGAGGCGCATACAGATTACATAAGGTGTGTGGCAGTTCATCCTACCCTTCCTTATGTACTATCATCATCTGATGATATGCTCATAAAGCTCTGGGATTGGGAGAAAGGATGGGTGTGTACTCAAATATTTGAGGGGCACTCTCATTATGTAATGCAAGTGACGTTTAATCCTAAAGACACCAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCTCCAGACCCCAATTTTACATTGGATGCCCATCAGAAAGGAGTTAATTGTGTCGATTACTTTACGGGTGGTGACAAACCTTATTTAATTACTGGTTCTGATGATCACACTGCCAAGGTATGGGACTATCAGACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACGCACAATGTATCAGCTGTTTGCTTTCATCCAGAACTTCCTATAATTATTACTGGTTCTGAGGATGGTACAGTACGCATATGGCACTCAACAACTTATAGGCTTGAGAACACTTTGAATTATGGTCTTGAAAGAGTTTGGGCTATTGGATACATGAAAGGTTCACGTCGTGTTGTGATTGGCTATGATGAAGGAACTATCATGGTCAAACTTGGTCGAGAAGAACCTGTAGCCAGCATGGACAACAGTGGGAAAATTATTTGGTCTAAGCATAATGAAATTCAGACTGTCAATATAAAGAGTGTAGGAGCAGATGTGGAGGTGGCTGATGGAGAAAGGTTACCTTTGGCTGTCAAGGAGTTGGGCACCTGTGATCTCTACCCACAGTTTTTAAAGCACAATCCAAATGGGAGGTTTGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACTGCATTGGCATGGAGAAATAGGTCATTTGGTTCAGCACTGGAGTTTGTTTGGTCTATGGATGGAGAATATGCTGTTAGAGAAAGTACATCAAGGATTAAAATTTTTAGCAAAAATTTCCAGGAAAAGAAAAGCATCCGACCAACATTTTCAGCTGAACGAATATTTGGTGGTACTTTACTAGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCCGAATGCAGGTTGATCCGTCGCATTGATGTTAATGTGAAAAACGTCTACTGGGCTGATAGTGGTGATCTACTGGCCATTGCTAGTGATACATCATTCTACATCCTGAAGTACAATCGCGATCTTGTTGCTTCATATTTGGATAGTGGGAGACCTGTAGATGAGCAAGGTTTGGAAGATGCCTTTGATCTCCTTCATGAAATGAATGAACGCGTCAGGACTGGCATCTGGGTTGGGGATTGTTTTATCTACAACAATTCCTCTTGGAGGCTTAATTACTGTGTTGGTGGTGAGGTAACTACAATGTTCCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAGGGTTTATTTGATAGACAAAGAGTTCAATGTTATAGGATACACACTGCTTTTAAGTTTGATTGAGTACAAGACTCTTGTGATGCGTGGTGATTTGGAAAGAGCCAATGAAGTTCTACCATCAATTCCTAAAGAGCATCATAACAGTGTGGCTCGTTTCCTGGAATCACGAGGAATGATAGAGGATGCTCTTGAAGTAGCTACTGACCCTGATTACAGATTTGAGCTAGCCATACAGCTTGGAAGATTAGAGGTTGCAAAGAGTATTGCCACAGAAGTGCAGAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTAGCTATGTCTACTGGCAAGTTAGAAATGGCTGAGGAGTGTTTAAAGCATGCAATGGACTTGAGTGGGTTGTTACTGTTATATTCTTCGCTAGGAGATGCTGAAGGAATATCGAAACTTGCAACCCTTGCTAAAGAGCAAGGGAAGAACAATGTTGCATTCCTTTGCTTATTTATGTTGGGTAAGCTTGAAGACTGCCTTCAATTGTTGGTAGAAAGCAATCGAATTCCTGAGGCAGCTTTAATGGCACGATCTTATCTCCCAAGTAAGGTCTCAGAGATAGTAGCAATTTGGAGAAAAGATCTCAATAAGGTTAATCCAAAAGCTGCTGAATCATTAGCTGATCCTGAGGAGTATCCTAATTTGTTTGAAGACTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCTGTAGAAACAAGGGGCGTTTACCCTCCTGCAGAAGAGTACATCAACCATGCTGATAAATCACATGTTACCCTTGTTGAAGCTTTCAGAAACATGCAGGTTGAAGAAGCGGAGGTGCCTCTGGAGAATGGGGACTCAAGTCATGAGTTGACTGAACAAAATGGAGAAGAGCATGGCACAGAGGAACATAATGAAGAGGAAGGAAGCCAAGAGGAGGCAGTTGTAGTGGATGCTGATTCTACAGATGGTGCAGTACTCGTTAATGGTAACGAGGCTGAAGAAGAGTGGGGTACGAATAATGAAGGAGCCCCGTCAGCCTAA 3186 0.419 MRFCERKPSPLKLRCRSIGTASSSASSCTEETSSKVSESPVRSANFTAGKSWVVAAADDKFIGVYEYDKMAKVRDYHHRNCLQTLEEHELTSCSIRETSRFSFESMEYWIQERIISVILCALINHQHIEQLQLLLLTGNHHYFLQPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKIKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYMKGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWSKHNEIQTVNIKSVGADVEVADGERLPLAVKELGTCDLYPQFLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSMDGEYAVRESTSRIKIFSKNFQEKKSIRPTFSAERIFGGTLLAMCSNDFICFYDWAECRLIRRIDVNVKNVYWADSGDLLAIASDTSFYILKYNRDLVASYLDSGRPVDEQGLEDAFDLLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVIGYTLLLSLIEYKTLVMRGDLERANEVLPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFELAIQLGRLEVAKSIATEVQSESKWKQLGELAMSTGKLEMAEECLKHAMDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAVESKAVETRGVYPPAEEYINHADKSHVTLVEAFRNMQVEEAEVPLENGDSSHELTEQNGEEHGTEEHNEEEGSQEEAVVVDADSTDGAVLVNGNEAEEEWGTNNEGAPSA 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0224 1061 SUPERFAMILY WD40 repeat-like 371 636 IPR036322 GO:0005515
Glsi06g0224 1061 PRINTS G protein beta WD-40 repeat signature 346 360 IPR020472 -
Glsi06g0224 1061 PRINTS G protein beta WD-40 repeat signature 388 402 IPR020472 -
Glsi06g0224 1061 PRINTS G protein beta WD-40 repeat signature 302 316 IPR020472 -
Glsi06g0224 1061 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 369 400 - -
Glsi06g0224 1061 Gene3D - 155 444 IPR015943 GO:0005515
Glsi06g0224 1061 Gene3D - 734 942 - -
Glsi06g0224 1061 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 271 IPR001680 GO:0005515
Glsi06g0224 1061 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Glsi06g0224 1061 MobiDBLite consensus disorder prediction 994 1061 - -
Glsi06g0224 1061 MobiDBLite consensus disorder prediction 996 1020 - -
Glsi06g0224 1061 FunFam Coatomer subunit beta 155 444 - -
Glsi06g0224 1061 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 316 - -
Glsi06g0224 1061 SUPERFAMILY WD40 repeat-like 146 441 IPR036322 GO:0005515
Glsi06g0224 1061 Pfam Coatomer WD associated region 463 907 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Glsi06g0224 1061 SMART WD40_4 148 187 IPR001680 GO:0005515
Glsi06g0224 1061 SMART WD40_4 318 359 IPR001680 GO:0005515
Glsi06g0224 1061 SMART WD40_4 362 401 IPR001680 GO:0005515
Glsi06g0224 1061 SMART WD40_4 232 271 IPR001680 GO:0005515
Glsi06g0224 1061 SMART WD40_4 27 66 IPR001680 GO:0005515
Glsi06g0224 1061 SMART WD40_4 275 315 IPR001680 GO:0005515
Glsi06g0224 1061 SMART WD40_4 190 229 IPR001680 GO:0005515
Glsi06g0224 1061 FunFam Coatomer subunit beta 734 942 - -
Glsi06g0224 1061 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 324 IPR001680 GO:0005515
Glsi06g0224 1061 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 239 271 - -
Glsi06g0224 1061 CDD Coatomer_WDAD_beta-like 448 923 - -
Glsi06g0224 1061 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 410 IPR001680 GO:0005515
Glsi06g0224 1061 PIRSF Beta'-COP 146 1034 IPR016453 -
Glsi06g0224 1061 PIRSF Beta'-COP 26 96 IPR016453 -
Glsi06g0224 1061 CDD WD40 161 441 - -
Glsi06g0224 1061 PANTHER COATOMER 148 457 - -
Glsi06g0224 1061 Pfam WD domain, G-beta repeat 364 400 IPR001680 GO:0005515
Glsi06g0224 1061 Pfam WD domain, G-beta repeat 277 315 IPR001680 GO:0005515
Glsi06g0224 1061 Pfam WD domain, G-beta repeat 321 359 IPR001680 GO:0005515
Glsi06g0224 1061 Pfam WD domain, G-beta repeat 235 271 IPR001680 GO:0005515
Glsi06g0224 1061 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 362 - -
Glsi06g0224 1061 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 368 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0224 Glsi-ChrGlsi06 1516087 1528676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0224 159 511 Miscellaneous Gene Families AT5G08390 20.166 5.84e-11 64.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0224 06 1516087 1528676 Glsi07g0270 07 1823697 1825928 CCT
Glsi06g0224 06 1516087 1528676 Glsi06g0224 06 1516087 1528676 ECH