Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi06g1987 | ATGGATTCCTCATCTCCCATGTCCATCCAGAAAACACCGTTCCAAGACATTCCAGAAGCTTCCCCAAAGCCTTACAAGAAAAGCTTCGTCACCTCTTTAATGGAGGCTGCCACCCACCGTACCTCCTCATTCAAAGAAGATAGCTACTTCGTTTCCCACTTGAAGTCTTCTGAAAAGAAAGCGCTTCAAGAGCTCAAGGACAAGCTCATGGCCTCTGAGGCCTCTGATGCGTCCATGTGGGGTATTCATTTGCTGGGTGGTGATGACAAAGCTGATGTCATACTCTTGAAGTTTCTCAGAGCTAGAGACTTCAGGGTTGGGGATTCGCTTAACATGCTTCTGAAGTGCTTGGCTTGGAGGAAAGAGTTCGGAGCAGAGAGCATCGTTGAGGAAGACTTGGGGTTCAAAGAGCTTGAAGGGGTTATAGCTTATATGCAGGGGTATGACAAAGAGGGTCACCCTGTTTGCTACAATGCCTATGGGGTTTTCAGAGACAAAGAAATGTATGAGAGGATTTTTGGGGACGAAGAGAAGCTGAAGAAGTTCTTGAGATGGAGAGTTCAAGTTCTTGAAAGAGGAATCAAGCTTCTTCATTTCAAACCTGGTGGGGTAAATTCACTCATTCAGGTCACAGACCTCAAAGACATGCCCAAGAGGGAGCTCAGGGTAGCTTCAAATCAGATCCTCTCTCTCTTCCAAGACAATTATCCGGAAATGGTGGCTCGTAAGATTTTTATCAATGTCCCTTGGTACTTCAGCATGTTATATTCGATGTTCAGTCCCTTTTTGACCCAAAGAACCAAGAGCAAATTTGTGATCTCGAAGGAAGGAAATGCTGCAGAGACACTCTATAAATTTATAAGACCCGAGGATATTCCTGTCCAGTATGGAGGACTGAGTAAACCCAGTGATTTGCAGAATGGTCCCCCTAAACCTGCTTCTGAGTTCACAGTCAAAGGAGGAGAGAAAGTGAACATCCAAATAGAAGGAATTGAGGCTGGTGCAACAATCACTTGGGACATTGTGGTGGGAGGTTGGGATTTGGAATACAGTGCAGAGTTTGTCCCAAATGCAGAAGGGAGCTACATTATAGCAGTTGAGAAGCCAAGGAAGATTGCTGCCTCTGAAGAAGCAATCCACAACTCATTCACAACAAAAGAAGCAGGAAAAATGGTGCTTGCTGTGGATAACATTGCTTCTAGGAGAAAAAAAGTTGCTGCATATCGCTACATTGTCCGCAAATGCAGCAACGTCTGA | 1257 | 0.4503 | MDSSSPMSIQKTPFQDIPEASPKPYKKSFVTSLMEAATHRTSSFKEDSYFVSHLKSSEKKALQELKDKLMASEASDASMWGIHLLGGDDKADVILLKFLRARDFRVGDSLNMLLKCLAWRKEFGAESIVEEDLGFKELEGVIAYMQGYDKEGHPVCYNAYGVFRDKEMYERIFGDEEKLKKFLRWRVQVLERGIKLLHFKPGGVNSLIQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFIRPEDIPVQYGGLSKPSDLQNGPPKPASEFTVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYIIAVEKPRKIAASEEAIHNSFTTKEAGKMVLAVDNIASRRKKVAAYRYIVRKCSNV | 418 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi06g1987 | 418 | Gene3D | - | 50 | 122 | - | - | |
| Glsi06g1987 | 418 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Glsi06g1987 | 418 | SUPERFAMILY | Supernatant protein factor (SPF), C-terminal domain | 315 | 414 | IPR036598 | - | |
| Glsi06g1987 | 418 | ProSiteProfiles | GOLD domain profile. | 280 | 414 | IPR009038 | - | |
| Glsi06g1987 | 418 | PANTHER | PATELLIN-1 | 28 | 414 | IPR044834 | GO:0008289 | |
| Glsi06g1987 | 418 | SMART | sec14_4 | 137 | 301 | IPR001251 | - | |
| Glsi06g1987 | 418 | Pfam | CRAL/TRIO, N-terminal domain | 61 | 114 | IPR011074 | - | |
| Glsi06g1987 | 418 | SUPERFAMILY | CRAL/TRIO domain | 136 | 301 | IPR036865 | - | |
| Glsi06g1987 | 418 | ProSiteProfiles | CRAL-TRIO lipid binding domain profile. | 130 | 304 | IPR001251 | - | |
| Glsi06g1987 | 418 | FunFam | SEC14 cytosolic factor family protein | 50 | 122 | - | - | |
| Glsi06g1987 | 418 | CDD | SEC14 | 135 | 299 | IPR001251 | - | |
| Glsi06g1987 | 418 | Gene3D | GOLD domain | 310 | 412 | - | - | |
| Glsi06g1987 | 418 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Glsi06g1987 | 418 | SUPERFAMILY | CRAL/TRIO N-terminal domain | 51 | 132 | IPR036273 | - | |
| Glsi06g1987 | 418 | Coils | Coil | 55 | 75 | - | - | |
| Glsi06g1987 | 418 | SMART | CRAL_TRIO_N_2 | 91 | 116 | IPR011074 | - | |
| Glsi06g1987 | 418 | FunFam | SEC14 cytosolic factor family protein | 139 | 314 | - | - | |
| Glsi06g1987 | 418 | Pfam | CRAL/TRIO domain | 139 | 298 | IPR001251 | - | |
| Glsi06g1987 | 418 | Gene3D | - | 129 | 309 | IPR036865 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi06g1987 | Glsi-ChrGlsi06 | 67208883 | 67210807 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi06g1987 | 95 | 293 | Acyl Lipid Metabolism Gene Families | AT1G55840 | 28.638 | 8.41e-12 | 63.9 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Glsi06g1987 | 06 | 67208883 | 67210807 | Glsi07g2122 | 07 | 65596222 | 65598559 | CCT | |
| Glsi06g1987 | 06 | 67208883 | 67210807 | Glsi06g1987 | 06 | 67208883 | 67210807 | ECH |