Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0373 ATGTTTCTCTTCTTCGATTCAATCTCCTTGGCACATTTCCAACAAGCATTCGGAGCTGAAGCAATTTCAATCCCACGTAAATGGAAGTTGAATGCGAAAAGTGAGGTTTCTTGTTCTACTCAGCTTATTGATGGAGATGGTGCATTCAATGTTCCTGGAATTGAAAATTTTATGAAGGAGGTGAAATTGGGTGAATGTGGGCTTTCGTATGCTGTAGTTTCTATTATGGGTCCACAAAGTAGTGGCAAGAGCACGCTATTAAATAATTTATTTGCTACCAACTTCAGGGAGATGGATGCTTTTAAGGGAAGGTCTCAAACAACTAAAGGAATTTGGATGGCAAGATGTGCTGGCATAGACCCTTGTACACTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGAGGAGAGGATGATACTGCATTTGAAAAGCAGAGTGCTCTTTTTGCTCTCGCTGTTTCAGATATAGTGCTAATAAACATGTGGTGTCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCTCTGTTGAAAACTGTCTTTCAGGTCATGATGAGATTGTTTAGCCCACGCAAAACAACATTAATGTTTGTCATACGTGATAAAACAAGGACACCTCTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGATTCTGTTCCTAAGCCACAGGCCCACGCGGAAACTCCATTAAGTGAATTCTTTAATGTTGAAGTTGTTGCTCTTTCTAGTTTTGAAGAAAAGGAAGAGCAATTTAAGGAGCAGGTTGCCAGCTTGAGGCAGCGATTCTTTCATTCTATTGCTCCTGGTGGGCTTGCAGGAGATAGGCGTGGAGTAGTTCCTGCTTCAGGCTTTTCTTTTAGTGCACAGCAAATCTGGAAAGTCATTAAGGAGAATAAGGATCTGGACCTTCCTGCCCATAAGGTCATGGTTGCTACTGTACGATGTGAAGAAATTGCCAATGAAAAATATGCTGCTTTTGCTGCAAATGAGGACTGGTGTCAGTTGGAAGAGGCTGTTCAATCTGGCCCAATTCCTGGATTTGGCAAAAAGCTTAGTTCAATCCTTGACACTTATCTGTCAGAGTATGATATAGAAGCCACTTATTTTGATGAAGGTGTCAGATCTGCAAAACAAAAGCAGCTTGAAGAAAAATTGTTGCAACTTGTCCAACCAGCATTCCAATATGCGCTGGGACATATAAGGTCTGCAATTTTGGATGAGTACAAGGAAGCACTTGAGAAGGCTTTAAATGGAGGGGAAGGGTTTTCTGCTGCTTCTAATAACTGTATTGGCTCTTGTATGGCTCAGTTTGATGAAGCCTGCGCAGATGTAGTTATTGAACAAGCAAACTGGGATACATCTAAAGTAAGGGAGAAACTCCAGCGTGATATTGATGCACATATTGCTTCTCTACGTGCAGCTAAGCTGTCTGATCTTACTTCATCATTTGAGAAAAAATTGAAGGAGGCCTTGTCTGAACCTGTTGAAGCTCTTCTGGATGGAGCTAATAGTGATACTTGGCCAAAAATAAGGAATCTTCTTAGGCGTGAGACTGAATCTGCAGTATCAGGCTTTTCTGCTGCACTTTCTGGGTTTGATATAGATAAAGAAACAAGGCAGAACATGATTGAAAGTTTAGAGGATTATGCAAGGGGTGTAATAGAGGCAAAGGCTAGGGATGAAGCTGGAAGAGTTCTGATCCATATGAAGGACAGGTTCACAACATTGTTTAGCCATGATTCTGATTCAATGCCTCGAATTTGGGCGGGGAATGAAGATATTCGAGCCATCACCAAGACTGCCCGCTCTGCTTCCTTGAAGTTGCTGTCTGTTATGGCTGCTATTCGTTTGGATGATTCTGCTGCTGATAATATTGAGAAAATATTAGCAGGTGCATTGGTGGATTCCTCAAGCAGTTCTATAAAAGATAGGAGCATCACAGCAGTTGATCCGCTGGCTTCAAGCTCTTGGGAAGAGATTCCATCCTCCAAAACCTTGATCACACCAGTACAGTGTAAATCTTTGTGGAGGCAATTCAAGACAGAGACAGAGTACAGCGTCACCCAGGCCATTTCTGCACAGGAGGCCAACAAGCGTAGTAACAACTGGTTACCTCCTCCATGGGCAATTGTTGCTTTAATTATTCTGGGATTTAATGAATTTATGACACTTTTAAGAAACCCGTTGTATTTGGGTGTCATCTTTGTTGGTTTCCTTCTCATGAAAGCGCTATGGGTGCAGCTGGACATTTCGGGTGAATTCCGCAATGGAGCTCTTCCGGGAATTTTATCCTTGTCATCCAAGTTCGTTCCAACTGTCATGAACCTCGTCAAAAAGCTTGCAGAAGAGGGACAGGGTCCTGCAACTAACAATCCTCAGAGAAATCCATCAAAAAGCAATCAAAATGCTATTACTGCCAGCAGTGAAATCTCATCTAGTGCTTCATCTAATGCAACTTCATTGGACAAGGGAAGCAGATACACCGGTCCATCAAAATTTGAGTAG 2526 0.4216 MFLFFDSISLAHFQQAFGAEAISIPRKWKLNAKSEVSCSTQLIDGDGAFNVPGIENFMKEVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFREMDAFKGRSQTTKGIWMARCAGIDPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHAETPLSEFFNVEVVALSSFEEKEEQFKEQVASLRQRFFHSIAPGGLAGDRRGVVPASGFSFSAQQIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYAAFAANEDWCQLEEAVQSGPIPGFGKKLSSILDTYLSEYDIEATYFDEGVRSAKQKQLEEKLLQLVQPAFQYALGHIRSAILDEYKEALEKALNGGEGFSAASNNCIGSCMAQFDEACADVVIEQANWDTSKVREKLQRDIDAHIASLRAAKLSDLTSSFEKKLKEALSEPVEALLDGANSDTWPKIRNLLRRETESAVSGFSAALSGFDIDKETRQNMIESLEDYARGVIEAKARDEAGRVLIHMKDRFTTLFSHDSDSMPRIWAGNEDIRAITKTARSASLKLLSVMAAIRLDDSAADNIEKILAGALVDSSSSSIKDRSITAVDPLASSSWEEIPSSKTLITPVQCKSLWRQFKTETEYSVTQAISAQEANKRSNNWLPPPWAIVALIILGFNEFMTLLRNPLYLGVIFVGFLLMKALWVQLDISGEFRNGALPGILSLSSKFVPTVMNLVKKLAEEGQGPATNNPQRNPSKSNQNAITASSEISSSASSNATSLDKGSRYTGPSKFE 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0373 841 Coils Coil 248 268 - -
Glsi06g0373 841 Hamap Protein SEY1 [SEY1]. 39 792 IPR008803 -
Glsi06g0373 841 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 76 311 - -
Glsi06g0373 841 Gene3D - 55 304 IPR027417 -
Glsi06g0373 841 CDD GBP 66 272 - -
Glsi06g0373 841 PANTHER PROTEIN SEY1 36 816 IPR008803 -
Glsi06g0373 841 Pfam Sey1 three-helix bundle domain 353 790 IPR046758 -
Glsi06g0373 841 MobiDBLite consensus disorder prediction 791 841 - -
Glsi06g0373 841 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 48 303 - -
Glsi06g0373 841 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 307 IPR027417 -
Glsi06g0373 841 MobiDBLite consensus disorder prediction 793 833 - -
Glsi06g0373 841 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 67 282 IPR030386 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0373 Glsi-ChrGlsi06 3052721 3061777 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0373 06 3052721 3061777 Glsi07g0416 07 2967799 2976805 CCT