Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0218 ATGGAGCTTATATCGGGTCTACCGGACGATATAGCCCGAGACTGTTTGATTCGGGTTTCGTATCAGCAGTTCGCGTCGGTCGCCTCGGTGTGCAAAGGCTGGCAGACGGAGATTGAGACGCCGGAGTTCGGCAGTCGTAGGAAGAGTACAGGGCATACCCAGAAAATCGTCGTCATGGTTCAGGCACGAGTTGACTCGGAGACATGCGTTGCCGGGCTCCTAAAGGGGTCGATCAACCCGGTTTACCGTCTGACTGTTCTTGAATCGGAGACGGGTAACTGGAGCGAGATGCCGACGCCCCCGGGATTAGCTGGCGGGTTACCCATGTTCTGTCAGTTAGCGGGTGTCGGTTACGATTTGGTGGTAATGGGCGGGTGGGACCCGGACTCGTGGAAGGCCTCGAATTCGGTGTTCATCTATAACTTCCTGTCGGCTAAATGGCGCCGCGGGGCTGACATGCCAGGTGGGCCCAGGACGTTCTTCGCCTGCGCATCGGATTCTCATCGGATGTTGTACGTCGCCGGTGGCCACAATGAGGAGAAGAACGCGTTGAAATCAGCCTTGGCGTATGACGTGGCAAGCGACGAGTGGGTCCCACTTCCTGACATGGAAAGAGAACGGGACGAGTGCAAGGCCATCTTCCACCGGGGAAGGTTCCACGTAATCGGTGGGTACTGCACGGAGATGCAAGGGCGATTCGAGGGAAGCGCCGAAGCCTTCGATGTCGCCACGCGGAGGTGGGACCATGTGGAGGAGGGATTCTTAGAGACGGCCACGTGTCCGAGGACGTGTGTCGACGGCGGTGATGACGATGAGAGAGTGTACATGTGCAGGGGTGGGGAGGTGATGGCATTGCAGGATTCAACGTGGCAAGTGATAGCTAAGTTGGCAGACGAGATACGCAACGTGGCGTATGTGGGAACGTGGGAAGGGAAAATGCTATTGATCGGAACAAGCGGGTATAGTGAACCGCACGTGGGAATTGAATTGGATCTTAAAAGTGGGACATGGAGAAAATTGGAGAGCCCACAAAGTTACACAGGCCACGTTCAGTCAGGTTGTCTTTTAGAAATTTAG 1077 0.5571 MELISGLPDDIARDCLIRVSYQQFASVASVCKGWQTEIETPEFGSRRKSTGHTQKIVVMVQARVDSETCVAGLLKGSINPVYRLTVLESETGNWSEMPTPPGLAGGLPMFCQLAGVGYDLVVMGGWDPDSWKASNSVFIYNFLSAKWRRGADMPGGPRTFFACASDSHRMLYVAGGHNEEKNALKSALAYDVASDEWVPLPDMERERDECKAIFHRGRFHVIGGYCTEMQGRFEGSAEAFDVATRRWDHVEEGFLETATCPRTCVDGGDDDERVYMCRGGEVMALQDSTWQVIAKLADEIRNVAYVGTWEGKMLLIGTSGYSEPHVGIELDLKSGTWRKLESPQSYTGHVQSGCLLEI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0218 358 PANTHER OS02G0208700 PROTEIN 2 358 IPR044595 GO:0080037|GO:2000762
Glsi06g0218 358 SMART kelc_smart 170 217 IPR006652 GO:0005515
Glsi06g0218 358 SMART kelc_smart 119 167 IPR006652 GO:0005515
Glsi06g0218 358 Pfam F-box domain 4 35 IPR001810 GO:0005515
Glsi06g0218 358 Gene3D - 46 353 IPR015915 GO:0005515
Glsi06g0218 358 Pfam Kelch motif 171 203 IPR006652 GO:0005515
Glsi06g0218 358 Pfam Kelch motif 108 158 - -
Glsi06g0218 358 CDD F-box_AtAFR-like 3 43 - -
Glsi06g0218 358 SUPERFAMILY Kelch motif 80 341 IPR015915 GO:0005515
Glsi06g0218 358 SUPERFAMILY F-box domain 3 43 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0218 Glsi-ChrGlsi06 1480535 1481611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0218 7 197 Miscellaneous Gene Families AT4G33900 23.645 2.47e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0218 06 1480535 1481611 Glsi07g0260 07 1719677 1720744 CCT
Glsi06g0218 06 1480535 1481611 Glsi06g0218 06 1480535 1481611 ECH