Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0215 ATGGGTGCTTCTCTGCCCCCTAAAGAGGCCAACCTCTTCAAGCTTATTGTTAAATCATATGAAACCAAACAATATAAAAAGGGACTCAAAGCAGCCGATGCCATTTTGAAAAAATTTCCTGACCATGGAGAAACTTTATCAATGAAGGGTTTGACGTTAAATTGCATGGATCGTAAGTCTGAAGCATATGAGCTAGTTCGTCAGGGGCTAAAGAATGACCTTAAAAGTCATGTTTGTTGGCATGTTTATGGTCTCCTTTATCGGTCAGACAGAGAATATAGGGAGGCAATTAAGTGCTATCGAAATGCACTGAAAATAGATCCAGACAATATTGAAATTCTACGTGACCTATCACTCTTACAGGCTCAAATGCGAGATTTATCTGGCTTTGTTGAGACAAGACAACGACTTCTGACTCTCAAGCCAAATCATCGCATGAACTGGATTGGCTTTGCTGTTGCTCATCATTTGAACTCTAATGTGTCCAAGGCAGTTGAAATTCTGGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGGTCCGAGCATGGGGAAATGCTTTTGTACAAGATCTCCTTGTTAGAGAAATGTGGATTTTTGGAGAGAGCTCTTGAGGAGTTGCACAAGAAAGAATTGAAAATTGTCGATAAGCTTGCATATAAAGAACAACAGGTATCTCTTTTACTGAAGCTTGGTCACTTAGAAGAAGGTGAAAAGTTGTACCGGGCCTTACTTTCCATGAATCCTGACAATTATAGATACTATGAAGGCCTCCAAAAATGTGTTGGGTTATATTCAGAAAATGGCCATTTTTCTCCTGAAGAAATAGATCAGTTAGATGCATTGTACAAATCACTTGGGCAGCAATATAAGTGGTCTTCTGCTGTGAAGAGAATACCACTTGATTTTCTACAAGGTGAAAAATTTCAAGAAGCAGCAAATAATTATATTAGGCCTCTCCTAACTAAGGGAGTTCCATCTCTGTTCTCTGATCTTTCTCCTTTGTACAATTCCCCTGGGAAGGCAGACATCTTGGAACAACTTATTCTGGAGTTAGAGCGCACAATTAGGACAACTGGTCAATACCCTGGGAGGGTGGAAAAAGAACCTCCTTCAACTCTTATGTGGACTTTGTTTTTATTGGCCCAGCATTATGACAGGCAGGGTCAGTATGAAATTGCTCTTTCTAAAATCGATGAGGCTATAGAACATACACCTACTGTTATTGATCTATATTCTGTCAAGAGCCGGATACTGAAGCATGCCGGTGATTTGGCTGCTGCTGCTGCATTTTCAGAGGAAGCTAGGTGTATGGATCTTGCTGATCGCTATATTAATAGTGAGTGTGTTAAGCGCATGCTGCAGGCTGATCAGGTGGCTTTGGCCGAAAAAACTGCTGTGTTGTTTACAAAAGATGGGGATCAACACAACAATCTCCATGACATGCAGTGCATGTGGTATGAACTTGCCTCTGGTGAAAGCTATTTCCGACAAGGTGATCTTGGACGGGCTCTCAAGAAATTTTTGGCAGTGGAGAAGCATTATGCAGATATTACTGAAGATCAATTTGATTTCCATTCATACTGCTTAAGGAAAATGACTTTGCGTACTTATGTGGAAATGCTTACATTTCAAGACCGACTGCACTCGCATGTATATTTTCATAAAGCAGCAGCTGGAGCTATAAGATGTTATATAAAATTGTATGATTCTCCTTTGAAGTCTACCGCTGAGGAGGAGGATGATATGTCTAAGTTGCTTCCTTCTCAAAAAAAGAAAATGAGGCAAAAACAGAGAAAGGCAGAAGCACGGGCTAAGAAAGAGGCCGAAGAAAAGAATGAAGAGTCAAGCGCAGGCAGTGTTTCAAAGTCTGGAAAGCGGCATGTAAAGCCTGTTGATCCAGATCCACGTGGGGAAAAGTTGTTGCAGGTTGAAGATCCTCTGATGGAAGCCACAAAATACTTGAAGTTGCTTCAAAAGAACTCGCCTGATTCATTAGAGACACACTTGCTCTCATTTGAATTATATATGAGAAAGCAAAAGGTCTTGCTTGCCTTTCAGGCTGTGAAGCATTTGCTGAGGTTGGATGTGGAACACCCTGATTCTCATCGTTGCTTGATAAAATTCTTCCATAAAGTGGGATCCATGAATGCTCCTGTGACTGACAGCGAGAAACTAATATGGAGTGTTTTAGAAACCGAGCGCCCAACTATTAGCCAATTGCATGAGAAATCTCTGTTCGAGGCAAACAACTCTTTCCTTGAAAAACATAAAGATTCTTTGATGCATAGAGCTGCTTTTGCGGAAATGTTGTACATTCTGGATGCCAACAGAACATCAGAGGCTGTAAAGTTGATTGAAGAGTCAACCAATGCACCAAGAAATGGAGCAATCGGACCAATCAGAAAATGGCAGCTTAAAGACTGTATTGCAGTTCATAAACTTCTCGGAACAGTCCTTGTTGACCACGATGCTGCATTGAGATGGAAAGTGCGTTGTGCAGAGTTTTTTCCTTATTCTACATACTTTGAAGGCAGCTGCAGCTCTGCTTCTCCCAACTCAGTCTTGAATCAGATATGTAGGAACTCTGAAAATGGGAGTCTTAACCATTCAGTGGATGGTCAAAATGTGGACTCTATCATATCAAATGGGAAATTAGAGGCATTTAAAGATCTCACCATTTGA 2700 0.4081 MGASLPPKEANLFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLSGFVETRQRLLTLKPNHRMNWIGFAVAHHLNSNVSKAVEILEAYEGTLEDDYPPENERSEHGEMLLYKISLLEKCGFLERALEELHKKELKIVDKLAYKEQQVSLLLKLGHLEEGEKLYRALLSMNPDNYRYYEGLQKCVGLYSENGHFSPEEIDQLDALYKSLGQQYKWSSAVKRIPLDFLQGEKFQEAANNYIRPLLTKGVPSLFSDLSPLYNSPGKADILEQLILELERTIRTTGQYPGRVEKEPPSTLMWTLFLLAQHYDRQGQYEIALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAAAFSEEARCMDLADRYINSECVKRMLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLTFQDRLHSHVYFHKAAAGAIRCYIKLYDSPLKSTAEEEDDMSKLLPSQKKKMRQKQRKAEARAKKEAEEKNEESSAGSVSKSGKRHVKPVDPDPRGEKLLQVEDPLMEATKYLKLLQKNSPDSLETHLLSFELYMRKQKVLLAFQAVKHLLRLDVEHPDSHRCLIKFFHKVGSMNAPVTDSEKLIWSVLETERPTISQLHEKSLFEANNSFLEKHKDSLMHRAAFAEMLYILDANRTSEAVKLIEESTNAPRNGAIGPIRKWQLKDCIAVHKLLGTVLVDHDAALRWKVRCAEFFPYSTYFEGSCSSASPNSVLNQICRNSENGSLNHSVDGQNVDSIISNGKLEAFKDLTI 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0215 899 FunFam N-terminal acetyltransferase A, auxiliary subunit 2 503 - -
Glsi06g0215 899 PIRSF NAT_A 1 816 IPR021183 -
Glsi06g0215 899 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Glsi06g0215 899 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 1 824 - -
Glsi06g0215 899 SUPERFAMILY TPR-like 191 427 IPR011990 GO:0005515
Glsi06g0215 899 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Glsi06g0215 899 Pfam TPR repeat 84 123 - -
Glsi06g0215 899 MobiDBLite consensus disorder prediction 606 622 - -
Glsi06g0215 899 Coils Coil 596 620 - -
Glsi06g0215 899 SMART tpr_5 380 413 IPR019734 GO:0005515
Glsi06g0215 899 SMART tpr_5 77 110 IPR019734 GO:0005515
Glsi06g0215 899 SMART tpr_5 43 76 IPR019734 GO:0005515
Glsi06g0215 899 Gene3D - 2 503 - -
Glsi06g0215 899 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 505 725 - -
Glsi06g0215 899 SUPERFAMILY TPR-like 33 168 IPR011990 GO:0005515
Glsi06g0215 899 SUPERFAMILY TPR-like 381 706 IPR011990 GO:0005515
Glsi06g0215 899 Gene3D - 505 725 - -
Glsi06g0215 899 MobiDBLite consensus disorder prediction 584 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0215 Glsi-ChrGlsi06 1443627 1463204 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0215 06 1443627 1463204 Glsi07g0257 07 1683594 1705858 CCT
Glsi06g0215 06 1443627 1463204 Glsi06g0215 06 1443627 1463204 ECH