Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0198 ATGAGACCCTTCTCACCAAAACAGCTGCCAGAACAACGGGTAACCCCTGCACCCGAGCTTCTCGCTGAAATGAAGAAGCAATCCAACCCAGAATCAGTGACTTTCCCATCAAAGTTTCCAGCTCAATTCTCCTCCGAATGCTGGATCGATGATGCATGCATACTCGACATGGATTTCTTCGTCAAAACTCTTTCCGGCATCAAGGCAAAAGGTGTGTGTGCTGACTTAATCGGTTCCATAATCACACAATATGCCTCCAAATGGCTTCCAGACCTCTCTGAAGGTGACGTGGCCGAAAGGGGTCTAACCAAATTTGAAGAATCACCTGAAAGTGTCACGGCTTCATGGATGAAGAAAAGGTTCTTTGTAGAAACCTTAGTGGGTGTTCTGCCTCCTGAGAAGGACTCCATCCCATGCAATTTCCTCCTTCGCCTTCTTAAAACAGCCAACATGGTTGGGGTTGAGCCTACATACAGAGCAGAGCTCGAGAAGCGAATTTCATGGCAGCTGGATGAAGCTTCATTAAAGGAGCTAATGATACCTTCTTTCAGTCACACTTGTGGGACACTGTTAGATGCTGAGCTTGTAATTAGGTTGGTGAACAGGTTCGTGAGTTTGGATAGTGAGGGTGCCAAAAGTGGTGCTTCTTTGGTTAAGGTGGCCAAGCTAGTTGACTGCTACCTCGCTGAGGCTGCCGTGGATGCCAATTTGAGCTTGTCTGAGTTCGTTGCTCTTGCAGGAGCTCTTCCTAGCCATGCAAGAGCTACGGATGATGGGTTGTACAGAGCCGTTGACACTTACCTTAAAGCACATCCGGGACTGTTGAAGCAAGAAAGGAAGGGTCTGTGTAGGCTGATTGATAACAGGAAACTCACACTTGAGGCCTCACTTCATGCAGCTCAGAATGAACGCTTGCCTGTGAGAGCTGTGATACAGGTGCTCTTCTCCGAGCAAACCAAACTCAACCGACATATAGATTGGAGCGGCACTGGCTCCTTCAGTGGTATCCGCAGCCCAAATGGCGGTGGGTTTGACCGGCCGGCACGGTGTCTATCTAAGCGTGAAATGAACGCTCAACAAATGGAGATAAGGAAGCTGAAAGAAGATGTTTACAGGCTTCAAAGCCAGTGCAATGCCATGCAAGTGCAGATGGAGAGGATGATGGAGAAGAAGAAGGGGATCTTCAAATGGAAGAAGCTTGGGATTTTGCCTACCTTAAGTAAAAGTGTGACGTCGGTTGAGAAGAATGAAGACGATGGAATTGAAGAGGAAGTTGGGCTTGGAAGACAAACACCAATGGACATGAAAACAAGGTTAGTAAAAGGTAGAAACCCTCGCAAGTGGAGGAGATCCATGTCCTGA 1362 0.4772 MRPFSPKQLPEQRVTPAPELLAEMKKQSNPESVTFPSKFPAQFSSECWIDDACILDMDFFVKTLSGIKAKGVCADLIGSIITQYASKWLPDLSEGDVAERGLTKFEESPESVTASWMKKRFFVETLVGVLPPEKDSIPCNFLLRLLKTANMVGVEPTYRAELEKRISWQLDEASLKELMIPSFSHTCGTLLDAELVIRLVNRFVSLDSEGAKSGASLVKVAKLVDCYLAEAAVDANLSLSEFVALAGALPSHARATDDGLYRAVDTYLKAHPGLLKQERKGLCRLIDNRKLTLEASLHAAQNERLPVRAVIQVLFSEQTKLNRHIDWSGTGSFSGIRSPNGGGFDRPARCLSKREMNAQQMEIRKLKEDVYRLQSQCNAMQVQMERMMEKKKGIFKWKKLGILPTLSKSVTSVEKNEDDGIEEEVGLGRQTPMDMKTRLVKGRNPRKWRRSMS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0198 453 Coils Coil 356 383 - -
Glsi06g0198 453 Pfam NPH3 family 47 296 IPR027356 -
Glsi06g0198 453 ProSiteProfiles NPH3 domain profile. 46 320 IPR027356 -
Glsi06g0198 453 PANTHER OS12G0117600 PROTEIN 45 406 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0198 Glsi-ChrGlsi06 1334811 1338073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0198 45 386 EF-hand Containing Proteins AT3G44820 31.733 1.49e-50 179
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0198 06 1334811 1338073 Glsi07g0231 07 1465950 1468609 CCT
Glsi06g0198 06 1334811 1338073 Glsi06g0198 06 1334811 1338073 ECH