Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0858 ATGATCAATCCAAACAAACACAAGAAGGAAGACATGGCGGGAGACTCGTACGAGGAGGCCATTGCAGGGTTGAGCAAGCTTCTCAGTGAGAAAGCAGAGCTGGGGGGCGTCGCCGCCGCAAAGATCAAACAGTTAACGGCCGAGTTAGATGTTGCCGGTTCGAAGCCCTTTAACCCCGACGAGAGGATCAAAACGGGGTTCCTTCATTTCAAGACAGAGAAATTCGAGAAGAATCCCGATTTATACGGTGAACTTGCCAAAGGCCAGAGCCCAAAGTTTATGGTATTTGCATGCTCAGACTCGAGAGTTTGCCCATCCCATGTTCTGGATTTCCAACCTGGGGAAGCCTTCGTGGTCAGAAACATCGCCAGCATGGTTCCACCCTATGACAAGACAAAGTATTCGGGAGCGGGAGCAGCCATTGAATACGCAGTCTTACATTTGAAGGTGGAGAATATTGTGGTAATTGGACATAGCTGCTGTGGTGGTATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTTCTACTGACTTCATAGAGCAATGGGTCCAAATTTGTACTCCAGCAAAGTCCAAGGTTAAATCACAAACAGGAAGCTCAAGTTTCTCGGAGCAGTGTACCAGCTGTGAGAAGGAAGCTGTGAACGTGTCGCTGGGGAACCTGTTAACTTATCCATTTGTGAGAGATGGGGTGGGGAAGAAGACGCTGGCATTGAAGGGTGCACATTATGATTTTGTTAATGGATCTTTTGAGCTGTGGGATTTGGACTTCAAAATTTCACCCTCTCTATCCTGCCTGACGCGGCCGCTGTGTTTCACGCACAGAATCAGATCTCCTCTTCCAATTTTCCAACATCGTCTGCGCTTCGCCAGTTCTAGGTTGTTAAATATGGCAGAATCAAAACCAGGATTGAGGAAGCCAGTCTTTACCAAGGTTGACCAACTTCGCCCGGGTACAAGTGGGCACACTCTAACTGTGAAGGTGGTCAGCACTAAGATGGTGCTGCAGAAAGGACGTCCTGATGGTCCTCAACCTCGTCAAATGCGAATTGCTGAATGTTTGGTGGGTGATGAGACAGGAATGATCATATTCACTGCCAGAAATGATCAAGTGGATTTGATGAAAGAGGGCTCTACCGTCATCCTGCGCAATGCCAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCTGTGGACAAGTGGGGCCGTGTTGAAGTCACAGAACCTGCTAGCTTCACTGTTAAGGAAGATAATAACTTGTCCCTGATTGAATATGAACTAGTGAATGTTGTTGTGGAGTGA 1308 0.4748 MINPNKHKKEDMAGDSYEEAIAGLSKLLSEKAELGGVAAAKIKQLTAELDVAGSKPFNPDERIKTGFLHFKTEKFEKNPDLYGELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNIASMVPPYDKTKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDDGTTSTDFIEQWVQICTPAKSKVKSQTGSSSFSEQCTSCEKEAVNVSLGNLLTYPFVRDGVGKKTLALKGAHYDFVNGSFELWDLDFKISPSLSCLTRPLCFTHRIRSPLPIFQHRLRFASSRLLNMAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRPDGPQPRQMRIAECLVGDETGMIIFTARNDQVDLMKEGSTVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKEDNNLSLIEYELVNVVVE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0858 435 FunFam Carbonic anhydrase 48 267 - -
Glsi05g0858 435 SUPERFAMILY Nucleic acid-binding proteins 299 433 IPR012340 -
Glsi05g0858 435 Gene3D - 321 424 IPR012340 -
Glsi05g0858 435 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 98 105 IPR015892 GO:0004089|GO:0008270|GO:0015976
Glsi05g0858 435 Gene3D Carbonic anhydrase 53 267 IPR036874 GO:0004089|GO:0008270
Glsi05g0858 435 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 142 162 IPR015892 GO:0004089|GO:0008270|GO:0015976
Glsi05g0858 435 Pfam Carbonic anhydrase 94 251 IPR001765 GO:0004089|GO:0008270
Glsi05g0858 435 PANTHER CARBONIC ANHYDRASE 50 259 IPR001765 GO:0004089|GO:0008270
Glsi05g0858 435 SMART Pro_CA_2 86 256 IPR001765 GO:0004089|GO:0008270
Glsi05g0858 435 SUPERFAMILY beta-carbonic anhydrase, cab 54 265 IPR036874 GO:0004089|GO:0008270
Glsi05g0858 435 CDD beta_CA_cladeB 66 255 IPR045066 GO:0004089|GO:0008270
Glsi05g0858 435 CDD SoSSB_OBF 325 408 - -
Glsi05g0858 435 FunFam Uncharacterized protein At4g28440 321 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0858 Glsi-ChrGlsi05 58913789 58925057 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0858 05 58913789 58925057 Glsi09g1062 09 7403162 7408315 CCT
Glsi05g0858 05 58913789 58925057 Glsi05g0858 05 58913789 58925057 ECH