Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0936 ATGATTGAAGGTGAATTTGAAGATTCGGTGATAGTTGTATTCTGGGTAACTGCTATTTTCATCTCTTTGGTTCTGGGAATGAGGAATGATGGCCAGAAACACCAGCAGGGAGGTGCTGTTCCTCGGTCAGGGCGAACCAATGGATTTATTCCCAGCTCATTCCGTGCTATCTCTAGCTACCTGAGGATCGTGTCGTCTGGTGCGTCTACCGTTGCGCGGTCTGCAGCATCCGTTGCGTCCTCGATTGTGGATAGGGATGATGACGTCGATCATGATCAGGTTATTTGGGCTGGGTTTGACAAGTTAGAGGGGGAGGGAGATGACATTCGGCGAGTTCTACTTCTAGGCTGTCGGTCTGGGTTCCAGGTTTGGGATGTTGAAGATTCCAAAAATGTGCGCGACCTAGTTTCCAGACATGATGGTCCTATTTCTTTTATGCAAATGTTACCAAAACCAATTGCATCAAAGAGATCAGAAGACAAGTTTGCAGACAGCCGCCCGCTGTTGGTTATTTGTGCTGATGGTTTCTTTTCTGGAGGCAGTAACATTCAGGATGGGTTGGCCACTCCATGCAATGGAAGCGCATCACACTGCCATGACCAAATGAATGGCGGTTATCTGCCAACTACTGTTAAGTTTTTTTCTTTGAGATCCCAATCATATGTTCATGTACTAAAGTTTAGATCAGTTGTTTATTCTGTAAGGTGCAGTTCTCGTGTTGTTGCTGTTTCTCAATCCACTCAGATACACTGTTTTGATGCCACAACATTAGAAAGGGAATATACTCTACTTACTAATCCTATTGTCACTAGTGGTCCTGGTTCTGGAGGTATAGGCTATGGACCTCTTTCGGTGGGTCCAAGATGGCTGGCTTATAGTGGAAGCCCAGTTGCAGTCTCTAATTCTGGGCGTGTCAATCCACAACATTTAACACCTTCTCCAAGCTTTCCTGGTTTCTCTTCAAATGGGAGCTTGGTTGCACACTATGCCAAAGAATCCAGCAGGCAACTTGCTGTGGGTATTGTGACCCTTGGAGATATAGGGTATAAGAAGCTTTCTAGATACTGCTCTGAACTACGGCCTGATAGCAATGGTTCTTTGCAATCTGTAAACTCTGGCAGGAAGAGCAATGGAACCGTCAATGGACATTCAGGGGATGCGGATAACGTTGGAATGGTTATTGTCAGAGATATTGTAAGTAAAGGCATTGTTGCCCAATTCCGAGCTCACAAAAGTCCTATTTCGGCTTTATGCTTTGATCCTAGTGGCACCATTTTAGTGACAGCTTCAGTTCAAGGGCATAATATAAATGTTTTCAAGATAATGCCTGGATACTCGGACAGTGTGTCGGCATTTGATGCCAGCTCTTCCTGTGTTCATCTTTACAGGCTGCAGCGAGGCTTTACAAATGCAGTTATCCAGGATATCAGTTTCAGTGATGACAGCAACTGGATTATGATTAGCTCCTCAAGGGGTACTAGCCATCTGTTCGCCATAAATCCTCAGGGAGGTTCTGTAAATATTCATTCCTATGATGCAAGTTTTACAGCAAAAAATAGTGGCTTGGGTGTTATGACTAATCAAGCAGTTCCATGGTCTCCTAGTTCGGGTTTACAAATGCCTAAACAACAGAGTCTGTGTGCAGCTGGCCCTCCAATCACACTTTCGGTTGTGAGCAGAATTAGAAATGGAAGTAATGGCTGGAGAGGGACTGTAACTGGTGCCGCTGCAGCTGCAACAGGTAGGATGAGTTCCCTTTCTGGGGCTATTGCTTCATCTTTCTGTAACTGTAAAGGCAGTGCCCTGTATGTTGATGGGAAATGGTTCAAGACAAAATATCACCTATTGGTTTTTTCTTCCACTGGGTCTATGATACAATATGCTCTGGGGACATCAACCGGTCAAGATTCTGAAGTTGTTTCTGGATTAACTCCTGCATATGAATCTACTTTAGAGGGGGATGCAAGATTAGTTGTTGAGGCTATGCAGAAATGGAATATATGTCAGAGACCTGGTGGAAGAGAACGAGAAGATAATGTTGACATATATGGTGAAAATGGAATTTCAGACCGCAATAAAATATATCCTGTAGTAGAAGTGAAGGAGGAGAGTAACACGAGCCCAAAACCTGAGAATGTAATCATGAAAGTGAATTCTTGTCCTGAGGAAGAGCACCATTTGTATATTTCAGAAACAGAACTTCAGACGCACCAAGCACGGACTCCATTGTGGGCAAAGTCGGAGATATATTTTCAGTCAATGGTGAAAGAGGAGAGCATAATAATGGGTGAAGAAACTGATTCAGAAGGGGAAGTTGAGATTGAAAGGATTCCAACGCGCATGATTGAAGCTAGGTCAAAACACTTGGTTCCAGTTTTGGACTATCTTCAGACTCCAAAATTCCAACAAACAAGCACTTCTACTCTGGATAATGAGGTAAATGAACAACGGTTGCATCAGAATACCAGGATGTCTGAAAATGACCAGGTTTCACACACAAGTAATTCAGACTCTCCTGACTCTATGACCAATTCTAGGGGTGCTGTATCTGAATTTTACGGTGGCATCAAAGGAACAGTGTGGAATGATCATCAGGTGTCAGCAGAAACAAAGGAATTTGTAAATAAGAATGACATACTTAAAGCAAATACTCGGCAAGAGATTGTAAATAATAAAGAGCACTCAAACATGGAGGCTCAACTCACGTTTGTAAATAGTGACGAAGAAGGCTTGAAAATGGAGAATTCCTTCGAAGACAAAGGCAACGAATTCGATTAA 2778 0.4323 MIEGEFEDSVIVVFWVTAIFISLVLGMRNDGQKHQQGGAVPRSGRTNGFIPSSFRAISSYLRIVSSGASTVARSAASVASSIVDRDDDVDHDQVIWAGFDKLEGEGDDIRRVLLLGCRSGFQVWDVEDSKNVRDLVSRHDGPISFMQMLPKPIASKRSEDKFADSRPLLVICADGFFSGGSNIQDGLATPCNGSASHCHDQMNGGYLPTTVKFFSLRSQSYVHVLKFRSVVYSVRCSSRVVAVSQSTQIHCFDATTLEREYTLLTNPIVTSGPGSGGIGYGPLSVGPRWLAYSGSPVAVSNSGRVNPQHLTPSPSFPGFSSNGSLVAHYAKESSRQLAVGIVTLGDIGYKKLSRYCSELRPDSNGSLQSVNSGRKSNGTVNGHSGDADNVGMVIVRDIVSKGIVAQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIMPGYSDSVSAFDASSSCVHLYRLQRGFTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPQGGSVNIHSYDASFTAKNSGLGVMTNQAVPWSPSSGLQMPKQQSLCAAGPPITLSVVSRIRNGSNGWRGTVTGAAAAATGRMSSLSGAIASSFCNCKGSALYVDGKWFKTKYHLLVFSSTGSMIQYALGTSTGQDSEVVSGLTPAYESTLEGDARLVVEAMQKWNICQRPGGREREDNVDIYGENGISDRNKIYPVVEVKEESNTSPKPENVIMKVNSCPEEEHHLYISETELQTHQARTPLWAKSEIYFQSMVKEESIIMGEETDSEGEVEIERIPTRMIEARSKHLVPVLDYLQTPKFQQTSTSTLDNEVNEQRLHQNTRMSENDQVSHTSNSDSPDSMTNSRGAVSEFYGGIKGTVWNDHQVSAETKEFVNKNDILKANTRQEIVNNKEHSNMEAQLTFVNSDEEGLKMENSFEDKGNEFD 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0936 925 FunFam Breast carcinoma-amplified sequence 3 319 550 - -
Glsi04g0936 925 MobiDBLite consensus disorder prediction 823 848 - -
Glsi04g0936 925 Gene3D - 367 538 IPR015943 GO:0005515
Glsi04g0936 925 MobiDBLite consensus disorder prediction 820 848 - -
Glsi04g0936 925 Pfam Breast carcinoma amplified sequence 3 550 791 IPR022175 -
Glsi04g0936 925 SMART WD40_4 455 498 IPR001680 GO:0005515
Glsi04g0936 925 SMART WD40_4 218 253 IPR001680 GO:0005515
Glsi04g0936 925 SMART WD40_4 400 440 IPR001680 GO:0005515
Glsi04g0936 925 Pfam WD domain, G-beta repeat 405 433 IPR001680 GO:0005515
Glsi04g0936 925 SUPERFAMILY WD40 repeat-like 111 500 IPR036322 GO:0005515
Glsi04g0936 925 MobiDBLite consensus disorder prediction 362 383 - -
Glsi04g0936 925 Gene3D - 90 272 IPR015943 GO:0005515
Glsi04g0936 925 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 40 897 IPR045142 GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0936 Glsi-ChrGlsi04 7461072 7467226 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1179 14 12933480 12943464 Glsi04g0936 04 7461072 7467226 CCT
Glsi04g0936 04 7461072 7467226 Glsi04g0936 04 7461072 7467226 ECH