Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0934 ATGCAGCTGCATATATCACCAAGTTTAAGGCATGTCACTGTGCTTCCTGGGAAAGGGTTCAAGGAATTTATCAAAGTGAAGGTTGCATCAAGAAGAGTTTCTTATAGAATGCTCTTCTATTCTCTCCTGCTCTTCACTTTCCTTCTTCGGTTTGTCTTTGTTTTGACTGCAGTGGATAGCATTGAAGGAGATATCAAGTGCTCTACCGTAGGTTGCCTGGGAAAAAGTATAGGACCAAGGATTTTGGGAAGAAAGCTTGAATCAACTGTCCCAGAAGTTATATACCGAATATTAGATGAACCCATTGGCAAAGATGAACTAGAGGGAAGATCTGATATTCCACAGACCTTAGAAGAGTTCATGACTGAAATGAAGGAAGGTGAATATGATTCCAAGACATTTGCTGTTAAACTTCGAGAAATGGTCATCCTCATGGAACAAAGGACCAGGACAGCCAAAATCCAAGAGTATTTATATCGCCATGTAGCATCAAGCAGCATACCCAAACAGCTTCACTGCCTTGACTTGAGGCTGGCCAGTGAGCATACCAACAATGCAGCAGCTCGCCTTCAGCTCCCCTCTGCAGAACTCGTCCCTGCCCTTGTTGACAACTCCTACTTCCACTTTGTACTCGCCTCAGACAATGTGTTGGCTGCTTCTGTGGTTGCAACATCACTCGTACGCAACTCTTTGCAACCCCAGAAGGTTGTTCTGCACATCATTACAGATAGAAAGACTTATTATCCCATGCAGGCTTGGTTCTCATTGCACCCTTTGTCACCTGCAATAATCGAGGTCAAGGCATTGCACCATTTTGATTGGCTCACAAAGGGAAAGGTGCCTGTTCTAGAAGCAATGGAAAAAGATCAACGAGTGCGGTCTCAGTTCAGAGGGGGATCATCAGCTATTGTTGCGAGTAATACTGAAAACCCACATGTTGTTGCAGCAAAGCTGCAAGCACTTAGTCCCAAGTATAATTCAGTGATGAACCACATTCGGATACATCTTCCAGAGTTGTTCCCAAGTCTTAACAAGGTGGTCTTCCTTGATGATGACATTGTGGTACAAACTGATCTTTCACCCCTGTGGGACATTGAAATGAATGGAAAAGTTAATGGAGCAGTAGAAACATGCACTGGAGAAGATAAGTTTGTGATGTCAAAGAGGTTGAAAAGCTATTTGAACTTCTCCCACCCTCTAATAGCCACGAGTTTTGACCCCAATGAATGTGCTTGGGCTTATGGCATGAACATTTTTGATCTGGAGGCTTGGAGGAAGACCAATATAAGCCTCACATATCATTTTTGGGTTCAGCAGAATATAAAATCAGACCTGAGTCTGTGGCAGCTAGGGACATTACCTCCTGGATTGATAGCATTCCATGGTCACGTCTACACCATTGATCCTTTCTGGCACATGCTGGGATTGGGATATCAGGAAAATACAAGTTTTTCTGATGCTGAGAGTGCTGGTGTCATCCATTTTAATGGCAGGGCAAAGCCATGGCTAGATATAGCTTTTCCACAACTAAGGCCATTGTGGGCTAAGTACGTAGAATTTTCAGACAGGTTCATTCAGAGCTGTCATATTAGGGCATCATAA 1602 0.4351 MQLHISPSLRHVTVLPGKGFKEFIKVKVASRRVSYRMLFYSLLLFTFLLRFVFVLTAVDSIEGDIKCSTVGCLGKSIGPRILGRKLESTVPEVIYRILDEPIGKDELEGRSDIPQTLEEFMTEMKEGEYDSKTFAVKLREMVILMEQRTRTAKIQEYLYRHVASSSIPKQLHCLDLRLASEHTNNAAARLQLPSAELVPALVDNSYFHFVLASDNVLAASVVATSLVRNSLQPQKVVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALHHFDWLTKGKVPVLEAMEKDQRVRSQFRGGSSAIVASNTENPHVVAAKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWDIEMNGKVNGAVETCTGEDKFVMSKRLKSYLNFSHPLIATSFDPNECAWAYGMNIFDLEAWRKTNISLTYHFWVQQNIKSDLSLWQLGTLPPGLIAFHGHVYTIDPFWHMLGLGYQENTSFSDAESAGVIHFNGRAKPWLDIAFPQLRPLWAKYVEFSDRFIQSCHIRAS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0934 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 209 526 IPR029044 -
Glsi04g0934 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 85 530 IPR029993 GO:0047262
Glsi04g0934 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
Glsi04g0934 533 CDD GT8_like_1 207 518 - -
Glsi04g0934 533 Pfam Glycosyl transferase family 8 210 506 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0934 Glsi-ChrGlsi04 7431939 7434950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0934 1 533 Glycosyltransferase AT5G54690 79.813 0.0 883
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1177 14 12927766 12930885 Glsi04g0934 04 7431939 7434950 CCT
Glsi04g0934 04 7431939 7434950 Glsi04g0934 04 7431939 7434950 ECH