Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0708 ATGAAAGAGCAGACCTCAAAGGGCTTGACGCCTGCTGGGATGATTGTGACCCCCAGTGTAGAGTGCGACAAGTTCTTTCAGGTAAGACGTCTTTCTGGCGAAGGAGAGAAAGTGAAGATGGTAGGAACAAATGGGAAATGCAAGTTGAAGGAAGCAGAGAGGGCTGAAAAGCTCATGCATCTCATCTCTTTTTCTCTTCTTCCTGACCTGGCTCTATGGTGTCCACCACTTCACCTCCTTTTCCCACGAAAACTTTCCAAAACAAATGCAGCTTTCTCTTTGAACTTTCTCTCCCAATCATCAAACCCACTATGCCGGAAATTTTCTGAGTCTGATTACCTCAGCTCACTCTCTTCCATTGTGTTGCCTCCAATGGCCGCTGTTACATCTTTGTCTTTCTCAGCATTATGCCAATGTTCTGATAGAAAACTAACTGTCCCTTCCCCTCGCTTCCTCGGATTCAATTCTGAGGCCTTTCGGTTTCGGACGAATTTTTCGTATGATTATGTAGGTGTTCGAGCTTCCAATTCGACTTCTAAAATGGTTATTCAATGCATGCCTTCTGGGACAGACATTCCCACTGTTTCTGAGACAAAGTTAAATTTCCTCAAGGCATATAATAGGCCAATCCCTAGTGTCTACAACACTGTGCTGCAAGAGCTCATTGTCCAGCAGCATTTAATGAGATACAAGAGATCATATCGTTATGACCCTGTATTTGCACTTGGTTTTGTTACCGTATATGATCAACTCATGGAAGGGTATCCTAGTGATGAAGATCGAGATGTCATCTTCCAAGCATACATTAAGGCGCTGAAGGAAGATCCAGCCCAATACAGATTAGATGCACAGAAGTTGGAAGAGTGGACTCGGGCTCAGAATCCAACTTCCCTGGTGGAGTTTTCATCTAGAGAAGGAGAAGTTGAGGGGACATTAAAGGATATTGCAGAAAGAGCAGGAGGAAAGGGGGATTTCAGTTATAGTCGTTTCTTTGCAGTAGGCCTCTTTCGACTCCTTGAATTGGCAAATGCAACAGAACCAACAATTTTAGAAAAGCTTTGTGCAGCTTTGAACATCAACAAAAGAAGTGTTGATCGGGATTTGGATGTTTATCGTAATCTGCTTTCCAAGTTGGTTCAGGCAAAAGAACTGCTAAGGGAATATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGTCTGAATCACAACAGGCTAACGAGGCCATTACAAAATGTTTGGGACAATATCAATACTCTGGCCTGTAG 1266 0.4329 MKEQTSKGLTPAGMIVTPSVECDKFFQVRRLSGEGEKVKMVGTNGKCKLKEAERAEKLMHLISFSLLPDLALWCPPLHLLFPRKLSKTNAAFSLNFLSQSSNPLCRKFSESDYLSSLSSIVLPPMAAVTSLSFSALCQCSDRKLTVPSPRFLGFNSEAFRFRTNFSYDYVGVRASNSTSKMVIQCMPSGTDIPTVSETKLNFLKAYNRPIPSVYNTVLQELIVQQHLMRYKRSYRYDPVFALGFVTVYDQLMEGYPSDEDRDVIFQAYIKALKEDPAQYRLDAQKLEEWTRAQNPTSLVEFSSREGEVEGTLKDIAERAGGKGDFSYSRFFAVGLFRLLELANATEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLREYVDREKKKREERSESQQANEAITKCLGQYQYSGL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0708 421 Hamap Protein Thf1 [thf1]. 189 397 IPR017499 GO:0010207|GO:0015979
Glsi04g0708 421 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 125 419 IPR017499 GO:0010207|GO:0015979
Glsi04g0708 421 NCBIfam photosystem II biogenesis protein Psp29 192 396 IPR017499 GO:0010207|GO:0015979
Glsi04g0708 421 Coils Coil 371 401 - -
Glsi04g0708 421 Pfam Thylakoid formation protein 194 399 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0708 Glsi-ChrGlsi04 5027109 5035314 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1377 14 14503328 14507047 Glsi04g0708 04 5027109 5035314 CCT
Glsi04g0708 04 5027109 5035314 Glsi04g0708 04 5027109 5035314 ECH