Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0417 ATGCCATCATCATTACTTTCCTCTTTCCTCCTCATGTCTCCTCTCTTCTTTATTCTTCTATTCTCTCTCATGCCTTCTTCTGGTAGTGCTCAGGGTCCACCTTCGCCTGGCTACTACCTAAGTTCCAAAATTAGTCCTATTAGCTTTGATCAAGGGTTTAGAAACCTCTGGGGACCTGACCATCAGAGACTAGACCAAGGCACATTGACAATCTGGCTTGACTCTCACTCAGGGAGTGGATTCAAGTCACTGCAATCTTATCAATCTGGATATTTCGGTGCTGCAGTTAAGCTTCAACCTGGTTATACTGCAGGAATCATCACATCCCTCTACCTGTCAAACAACCAAGATCACCCAGGAAACCACGATGAAATTGACATTGAGTTCCTTGGTACAACTCCAGATAAGCCATATGTCTTGCAGACAAATGTGTACATCAGAGGAAGTGGCGACGGGAATATTATAGGGAGAGAGGTGAAGTTTCATCTTTGGTTCGACCCGACACAAGATTTTCACAACTATGCTATCCTGTGGAAACCCAGTGAGATAATATTCCTAGTGGACGATGTCCCCATAAGAAGGTATCCTAGGAAGAGTGATGCTACATTTCCCACAAGACCAATGTATGTGTACGGATCAATATGGGACGCATCTCCCTGGGCTACAGAGGATGGAAAATACAAAGCTGATTATAAATACCAACCCTTCGTTGGTAGGTACAGAAATTTCAAGCTCAATGGTTGTACCAGTAATAGCCCTGCCTCCTGCCAATCACCTTCTGCCTCACCATCTGGCTATGGCAGTCTCAGCCCCCAGCAGAATGCTGCCATGCAATGGGTCCAAAACAATTATCTGGTTTATAACTATTGCCATGACCCTAAGAGAGACCATACACTCATTCCCGAGTGTTAG 912 0.4485 MPSSLLSSFLLMSPLFFILLFSLMPSSGSAQGPPSPGYYLSSKISPISFDQGFRNLWGPDHQRLDQGTLTIWLDSHSGSGFKSLQSYQSGYFGAAVKLQPGYTAGIITSLYLSNNQDHPGNHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDGNIIGREVKFHLWFDPTQDFHNYAILWKPSEIIFLVDDVPIRRYPRKSDATFPTRPMYVYGSIWDASPWATEDGKYKADYKYQPFVGRYRNFKLNGCTSNSPASCQSPSASPSGYGSLSPQQNAAMQWVQNNYLVYNYCHDPKRDHTLIPEC 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0417 303 Gene3D - 29 303 - -
Glsi04g0417 303 Pfam Glycosyl hydrolases family 16 50 232 IPR000757 GO:0004553|GO:0005975
Glsi04g0417 303 PIRSF EndGlu_transf 13 303 IPR016455 GO:0010411|GO:0016762|GO:0042546
Glsi04g0417 303 FunFam Xyloglucan endotransglucosylase/hydrolase 36 303 - -
Glsi04g0417 303 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 266 303 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Glsi04g0417 303 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 48 303 IPR044791 GO:0004553
Glsi04g0417 303 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 40 240 IPR000757 GO:0004553|GO:0005975
Glsi04g0417 303 SUPERFAMILY Concanavalin A-like lectins/glucanases 48 303 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0417 Glsi-ChrGlsi04 2725142 2726862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0417 15 303 Glycoside Hydrolase AT3G44990 67.820 2.26e-147 414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1654 14 16930073 16931471 Glsi04g0417 04 2725142 2726862 CCT