Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0225 ATGGAACTTTCCTCAGCACACGTGGCAGCCTCGAAACACGAAATTTCAGAAACCCTGATAATGGCAGCCAATTCTTCAAATGGAGATCACCAAACATCAACAAAGGCACCACCCTCGCCATCTCCCTTGCGTTTTTCCAAATTCTTTCAGTCCAACATGAGAATTTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCACCTAGTAGACAGATTGATGGAAAATGAAAAAAATGAGGTAATTGTTGCTGATAACTACTTCACTGGATCCAAGGACAACCTCAAAAAATGGATTGGTCACCCAAGATTTGAGCTTATTCGTCATGATGTCACGGAGCCTTTGTTGGTTGAGGTTGATCAGATTTATCATCTTGCATGTCCTGCTTCTCCTATCTTCTATAAATACAACCCCGTGAAGACAATAAAGACAAATGTGATTGGTACGCTGAACATGCTTGGGCTAGCAAAGCGAGTTGGAGCAAGGATTTTGCTTACGTCAACTTCAGAAGTATATGGGGATCCTCTTGTGCATCCACAACCTGAAAGCTACTGGGGCAATGTTAACCCCATAGGAGTTCGAAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCACAGGCAGCACGGAATAGAAATACGCATTGCAAGGATCTTTAACACATATGGACCACGCATGAATATCGATGATGGCCGTGTTGTCAGCAACTTCATTGCTCAAGCACTTCGCGGTGAACCATTGACAGTCCAATCTCCAGGAACACAAACTCGTAGTTTCTGCTATGTCTCTGACTTGGTTGAAGGCCTCATCCGTCTTATGGAAGGACAGGACACTGGGCCAATCAACCTTGGAAACCCAGGTGAATTTACAATGGTTGAACTTGCGGAGACAGTGAAGGAGCTTATTAATCCAGAAGTGGAGATAAAGATGGTGGAGAACACCCCTGATGATCCTAGGCAGAGAAAACCAGACATAACAAAAGCAAAGGAATTACTGGGTTGGGAACCAAAGGTCAAGTTGCGGGATGGCCTTCCTCTTATGGAAGAGGATTTTCGTCTCAGGCTTGGGGTTGACAAGAAGAATTAA 1101 0.445 MELSSAHVAASKHEISETLIMAANSSNGDHQTSTKAPPSPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQSPGTQTRSFCYVSDLVEGLIRLMEGQDTGPINLGNPGEFTMVELAETVKELINPEVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRLRLGVDKKN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0225 366 FunFam UDP-glucuronic acid decarboxylase 6 52 361 - -
Glsi04g0225 366 Pfam GDP-mannose 4,6 dehydratase 56 350 IPR016040 -
Glsi04g0225 366 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 29 361 IPR044516 GO:0042732|GO:0048040|GO:0070403
Glsi04g0225 366 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 48 357 IPR036291 -
Glsi04g0225 366 CDD UGD_SDR_e 53 357 - -
Glsi04g0225 366 Gene3D - 52 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0225 Glsi-ChrGlsi04 1431334 1435981 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0225 50 365 Miscellaneous Gene Families AT1G02000 24.217 5.54e-17 80.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1813 14 18393786 18396835 Glsi04g0225 04 1431334 1435981 CCT