Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3460 ATGGTTGTGCCTTCTCCAAGTTCTAATATGAGAAGCAAGAAAACAAATGCTGTGGGGATTCCGACGATCGACCTTTCCATGGAAAGGTCAGAGATATCGGAGTCAGCGGTAAAAGCCTGCGAAGAATATGGTTTCTTCAAGGTGGTCAACCACGGGGTGCCAAAGGAGATCATTTCAAGATTGGAAAACGAAGCAGTTGATTTTTTTGGGAAATCCACCTCAGAGAAGCGACAAGCTGGTCCGGCTACTCCTTTCGGTTATGGTTGCAGAAACATTGGCCCCAACGGGGATATGGGCGAGCTAGAGTATCTTCTTCTTCATACAAATCCTCTTTCCGTCTCCGAGAGATCCAAAACTATCGCAAACAACCCTACCAAATTCAGTTGTGCCGTGAATGATTACATAAAAGCAGCGAGGGAACTAGCATGTGAGATTGTTGATGTAGTGGCGGAGGGATTGTGGGTCCCTGACAAGTTCGCCTTGAGCAGGCTGATCAGAGACGTCCACAGCGACTCCGTGCTGAGGATCAATCACTACCCTCCCACGAAGAGCAACAAGAATTGGGGCCCATCAAAAGTTGATCAACGTCAATTCATTAATAATAGCATTGGGTTTGGGGAGCATTCTGACCCTCAGATCTTGACAATCCTACGGTCTAACGACGTTGGGGGCCTTCAGATCTGTACGCAGGACGGGTTATGGATCCCCGTGCCCCCAGACCCCAGTGAATTCTTTGTGATGGTCGGTGATGCCCTCCAGGTTTTGACAAATGGGAGGTTCACAAGCGTGAGACACAGAGCATTGACAAACCCGCGCAAGGCAAGAATGTCAATGATGTACTTTGCAGCACCGCCACTGAACTCGTGGATCACTCCTCTCCCGAAGATGGTGTCACCCCACAACCCGTCTCTATATAACCCCTTCACCTGGGCTCAATACAAGCAAGCCGCCTATTCTCTCCGACTCGGAGCCTCCAGACTTGACCTCTTCAAGGCTAAAGACACCGCTTCTCCATATTGA 1020 0.4941 MVVPSPSSNMRSKKTNAVGIPTIDLSMERSEISESAVKACEEYGFFKVVNHGVPKEIISRLENEAVDFFGKSTSEKRQAGPATPFGYGCRNIGPNGDMGELEYLLLHTNPLSVSERSKTIANNPTKFSCAVNDYIKAARELACEIVDVVAEGLWVPDKFALSRLIRDVHSDSVLRINHYPPTKSNKNWGPSKVDQRQFINNSIGFGEHSDPQILTILRSNDVGGLQICTQDGLWIPVPPDPSEFFVMVGDALQVLTNGRFTSVRHRALTNPRKARMSMMYFAAPPLNSWITPLPKMVSPHNPSLYNPFTWAQYKQAAYSLRLGASRLDLFKAKDTASPY 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3460 339 FunFam Gibberellin 2-beta-dioxygenase 2 4 321 - -
Glsi02g3460 339 Gene3D - 3 321 IPR027443 -
Glsi02g3460 339 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 20 315 - -
Glsi02g3460 339 PRINTS Isopenicillin N synthase signature 244 270 - -
Glsi02g3460 339 PRINTS Isopenicillin N synthase signature 208 229 - -
Glsi02g3460 339 PRINTS Isopenicillin N synthase signature 36 53 - -
Glsi02g3460 339 Pfam 2OG-Fe(II) oxygenase superfamily 171 283 IPR044861 -
Glsi02g3460 339 Pfam non-haem dioxygenase in morphine synthesis N-terminal 20 84 IPR026992 -
Glsi02g3460 339 SUPERFAMILY Clavaminate synthase-like 12 322 - -
Glsi02g3460 339 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 169 292 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3460 Glsi-ChrGlsi02 81811595 81814663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3460 3 331 Glycosyltransferase AT5G59530 27.778 3.55e-29 113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3460 02 81811595 81814663 Glsi11g0406 11 2698302 2700728 CCT
Glsi02g3460 02 81811595 81814663 Glsi02g3460 02 81811595 81814663 ECH