Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0194 ATGGAAAGGCAGCAGCTAGGCAATAGGCATGAAGTTAAACTTAGTGGAGCACCATATTCTGAGCTAGTTGACTTCTACTTCCAGCTAAGTCCCTTCCCTTATTAGTGTAGGCTACAGGCAAAGGCTCAACTTGTGGGCATAATAGTTGTATGTTCTGAAAATGAATATTCCGGGGATGAAAGGAATAAAAGGCTTGGGTCTCTTAAGAAGGTGGCAATCAGTGCCTCAACTAAGTTCAGGAATTCCTTGACAAAGAAGGGTCGGAGGCACAGCCGGGTTATGTCTGTGTCTTTTGAGGATGACCTTGACGCAGAAGAGTTGGAAGCAGTTGATGCTTTTCGCCAAACACTTATCTTGGAAGAGCTATTACCTGCCAAGCATGATGATCATCATATGATGCTAAGATTCTTGAGAGCAAGGAAGTTTGACATTGAGAAAACAAAGCAAATGTGGGCAGATATGCTTCAGTGGAGGAAAGAATTTGGTGCTGACACTATCATGGAGGATTTTGAGTTCAAGGAACTAGACGAAGTTTTAAAATACTACCCGCAAGGACATCATGGAGTTGATAAGGATGGACGACCTGTTTACATTGAAAGATTGGGTCAGGTTGATCCTAACAAGCTGATGCAAGTGACAACTATGGACCGCTATGTTAAGTACCATGTAAGAGAGTTTGAGAGAACTTTTGTTGTTAAGTTCCCTGCCTGTTCAATTGCTGCAAAGAAGCACGTTGACCAAAGCACCACCATTTTGGATGTGCAAGGAGTGGGCCTTAAAAATTTCAACAAAGCAGCAAGGGATCTCATCCAGCGGCTTCAGAAGATTGATGGTGACAACTATCCGGAGACCTTGAACCGAATGTTCATCATCAATGCGGGGTCTGGATTTAGACTCTTGTGGAACACCGTTAAGTCATTCCTTGATCCCAAGACCTCCTCAAAAATCCATGTTCCTGCCCCAAAGCAATTGAGTGTGCATCAATATGATGCCTTTGTCCCAGTGGTTGACAAACCAGTTGATACACATTGGATAAAAGCAGCACAAAATGATAAATTTGCACTTTCAAAAGATTGTTTCCCTGTGGATACTTCCAAGCCTTCTGATGGGTTTAGCAATCAAATTGTTGGTGGGGTTATGGCCTTAATTATGGGAATTGTTGCAATGATCCGGTTGACAAAGAACATGCCAAGGAAACTCACTGAAGCTGCCCTTTATAGCAGCTCAGTATACTATGATGGATCAATGATGAAAGGCCATCAGTTGCCAGCGCAGGAAGTTTCCATCAATGATCATATGGCCATGATGAAGCGCATGGCTGAACTAGAGGAGAGGGTGAAAGTTCTGACCCTCAAACCTGCCATGCCACCTGAAAAGGAGGAGTTGCTGAATGCTACTCTTAGCAGAGTCATTACTCTGGAACAAGAGTTAGCTGCAGCTAAAAAGGCACTTGATGTTGCTCTTATTCGGCAAGAGGAGCTCCAAGCCCATGTTGACAAGAAGAAGAAGAAGAAGAAGAAATTTGTATGTATTTTTGAACTCACTTGCACAGTTACATTACTTGCCAATTACCATGCATTTTTCAGTGGTTGTAAAGAGAGTTTTTACTTACACAAGTTTTTTGGGTTTGGCATTGCAGTTCCGGTGGTAAGTGGATAG 1659 0.4286 MERQQLGNRHEVKLSGAPYSELVDFYFQLSPFPYXCRLQAKAQLVGIIVVCSENEYSGDERNKRLGSLKKVAISASTKFRNSLTKKGRRHSRVMSVSFEDDLDAEELEAVDAFRQTLILEELLPAKHDDHHMMLRFLRARKFDIEKTKQMWADMLQWRKEFGADTIMEDFEFKELDEVLKYYPQGHHGVDKDGRPVYIERLGQVDPNKLMQVTTMDRYVKYHVREFERTFVVKFPACSIAAKKHVDQSTTILDVQGVGLKNFNKAARDLIQRLQKIDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTSSKIHVPAPKQLSVHQYDAFVPVVDKPVDTHWIKAAQNDKFALSKDCFPVDTSKPSDGFSNQIVGGVMALIMGIVAMIRLTKNMPRKLTEAALYSSSVYYDGSMMKGHQLPAQEVSINDHMAMMKRMAELEERVKVLTLKPAMPPEKEELLNATLSRVITLEQELAAAKKALDVALIRQEELQAHVDKKKKKKKKFVCIFELTCTVTLLANYHAFFSGCKESFYLHKFFGFGIAVPVVSG 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0194 552 SMART sec14_4 174 342 IPR001251 -
Glsi01g0194 552 SUPERFAMILY CRAL/TRIO N-terminal domain 99 170 IPR036273 -
Glsi01g0194 552 Coils Coil 463 483 - -
Glsi01g0194 552 Gene3D - 162 335 IPR036865 -
Glsi01g0194 552 Gene3D - 74 161 - -
Glsi01g0194 552 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 174 357 IPR001251 -
Glsi01g0194 552 SMART CRAL_TRIO_N_2 129 154 IPR011074 -
Glsi01g0194 552 Pfam CRAL/TRIO, N-terminal domain 126 153 IPR011074 -
Glsi01g0194 552 CDD SEC14 175 329 IPR001251 -
Glsi01g0194 552 SUPERFAMILY CRAL/TRIO domain 174 321 IPR036865 -
Glsi01g0194 552 Pfam CRAL/TRIO domain 180 323 IPR001251 -
Glsi01g0194 552 Coils Coil 432 452 - -
Glsi01g0194 552 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 54 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0194 Glsi-ChrGlsi01 1576965 1586352 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0194 108 363 Acyl Lipid Metabolism Gene Families AT5G47730 25.094 3.60e-15 75.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0194 01 1576965 1586352 Glsi01g0194 01 1576965 1586352 ECH
Glsi01g0194 01 1576965 1586352 Glsi09g0591 09 4089457 4093850 ECH