Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2121 ATGTCGTCTCTCAGTAGGGAGTTGGTGTTCTTGATCTTGCAGTTTCTGGACGAGGAAAAGTTCAAAGAGACTGTTCATAAGCTTGAGCAGGAGTCTGGGTTTTTCTTTAACATGAAGTACTTTGAGGATGAAGTGCACAATGGCAATTGGGATGAGGTTGAGAAGTACCTCTCTGGCTTCACAAAAGTTGATGATAATAGGTACTCTATGAAGATATTTTTCGAGATAAGGAAGCAGAAGTACCTCGAGGCATTAGATAAGCATGATCGGTCCAAGGCTGTAGAAATATTAGTGAAGGATTTGAAAGTATTTGCCACATTTAATGAAGAACTGTTCAAGGAAATCACACAGCTTTTGACACTGGAGAATTTTAGGGAAAACGAACAATTGTCAAAGTATGGTGATACGAAGTCTGCAAGAGCGATCATGTTGGTTGAGCTCAAAAAGTTGATTGAGGCAAATCCCCTATTCCGTGACAAATTGCAGTTTCCTAACCTTAAAAATTCAAGGTTACGTACTCTCATCAATCAAAGCTTGAATTGGCAGCATCAACTTTGTAAGAATCCACGTCCAAATCCAGATATAAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGGGCTCCATCTCCTGCTAATAATCCACTACTAGGATCCTTACCAAAGGCTGGAGGATTTCCACCTCTTGGTGCACATGGGCCTTTCCAACCAACTCCAGCACCTGTTCCACCACCCCTGGCTGGTTGGATGTCAAATCCTACCACTGTAGCACATCCTGCTGTTTCTGGAGGAGGAGCTATAGGTCTTGGTGCACCATCAATCCCTGCTGCTTTGAAGCACCCCAGGACCCCTCCAACCAATCCTTCTGTTGACTACCCATCAGGTGATACAGATCATGTCTCAAAGAGAACAAGACCAATGGGAATGTCAGATGAGGTAAATCTACCGGTCAATGTCTTGTCAGCCACATTTCCGGGGCATGGTCATGGCCAGACTTTTAATGCACCTGATGACTTGCCGAAAACTGTCATGCGAACTCTGAACCAGGTTTCATCTCCTATGAGCATGGACTTTCATCCAATTCAACAGACTATACTTCTTGTTGGTACAAATGTGGGGGACATTGCTTTGTGGGAAGTGGGTTCTAGGGAGCGGTTGGTCTTAAAGAACTTCAAAGTTTGGGATCTTAGTGCTTGTTCAATGCCATTTCAGGCTGCTCTTGTCAAAGATCCAGCTGTTTCTGTCAACCGTGTGATTTGGAGTCCAGATGGTGCTTTATTTGGAGTTGCTTACTCAAGGTATATTGTTCAGATATACTCTTACCATGGTGGTGATGAACTGCGGCAGCATCTAGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCATTCTCCCATCCAAATAAGCAACTTTGTGTGATAACCTGTGGTGATGATAAGACCATTAAGGTATGGGATGCTGCTACTGGTGCAAAGCAGTATACTTTTGAAGGTCACGAGGCACCAGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAGTTCATCTTTTCAACAGCATTAGATGGAAAGATAAAAGCGTGGTTGTATGACAATTTGGGATCTCGTGTTGATTATGATGCTCCTGGTCGTTGGTGCACCACAATGGCCTATAGTGCTGATGGTACAAGGCTATTTTCATGTGGGACAAGCAAGGACGGGGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGGACATATCAGGGATTTCGTAAACGATCTTTGGGTGTTGTACAGTTTGACACAACCAAAAATCGATATTTGGCTGCTGGCGATGATTTCTGCATTAAATTCTGGGATATGGACAATATTCAGCTTTTGACAACTGTTGACGCTGATGGGGGTCTCCCTGCAAGCCCACGTATCCGTTTCAACAAGGACGGAGCTCTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATCTTAGCTAATGGAGATGGTATTCGGTTGTTGCGTTCTTTAGAGAGTTCAATGTATGATGCATCAAGAACGTCAGATGCTATGGCAAAGCCGACAATAAATCCAATTTCAGCTGCCGCTGCCACTAGTGCTTCACTTGCAGAGAGGGCCCCATCTGTAGTAGCCATTGCTGGAATGAATGGGGATGCCCGAAACTTGAGTGATGTGAAACCCAGAATAAGTGAAGAATCCAATGACAAGTCAAAGATATGGAAGCTCACAGAAATCAACGAACCATCTCAATGTAGATCCTTGAAGCTACCCGAGAATGTACGAGTAACTAAGATATCAAGGTTGATATACACTAATTCAGGTCATGCTATTCTAGCATTAGCTTCAAATGCCATTCATCTGCTCTGGAAATGGGCACGAAGTGACCGTAATTCATCTGGCAAGGCCACTGCCAGTGTCCCACCTCAGTTGTGGCAACCTTCAAGTGGCATCCTGATGACTAATGACATCAGTGATAGCAACACTGAAGATGCTGTTCCCTGCTTTGCTCTGTCCAAAAATGATTCTTATGTAATGTCAGCATCGGGAGGCAAGATTTCTCTGTTCAATATGATGACTTTTAAGACAATGACTACTTTCATGCCTCCGCCACCTGCAGCAACCTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATAGGCATGGATGATTCTTCAATTCAGATATATAATGTCCGCGTGGATGAGGTTAAAAGTAAACTCAAAGGCCATACTAAAAGAATTACTGGTCTTGCTTTCTCCCATGTATTGAATGTGCTAGTTTCATCTGGGGCGGATGCTCAGATTTCTGTGTGGAATACTGATGGATGGGAAAAGCAGAAGACTAGATTCTTGCAATTTCCTGCTGGGAGGACTCCATCAGCACAGGCAGATACGCGCGTACAGTTCCATCAGGATCAGATTCGCTTCTTGGTTGTACATGAAACTCAGCTTGCCATCTATGAAGCTACGAAACTAGATTGTCTAAAGCAGTGGTTTCCCCAAAATTCTGCTGCACCGATCTCCCATGCAACTTTCTCATGTGATAGCCAGCTGATATACGCCAGCTTTTTAGATGCAACAGTTTGTGTATTTAGTGCTTCAAACCTCAGATTACGCTGTCGTATCAATCCTACTGTATATCTTTCCGCAAGTGTCAGCAGTTCTAATGTACAACCACTTGTAATCGCTGCACATCCACAAGAACCAAATCAATTTGCTGTAGGACTGTCAGATGGTGGAGTTCATGTCTTCGAGCCCCTTGAGTCTGAAGGCAGATGGGGCGTGCCACCACCCATCGAGAATGGGTCAGCAAGCAATGTTGCAGCTCCTTCAGTTGGAGCTTCTTCAGAAGAAGCCCAGAGATGA 3399 0.4366 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPPPLAGWMSNPTTVAHPAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDTDHVSKRTRPMGMSDEVNLPVNVLSATFPGHGHGQTFNAPDDLPKTVMRTLNQVSSPMSMDFHPIQQTILLVGTNVGDIALWEVGSRERLVLKNFKVWDLSACSMPFQAALVKDPAVSVNRVIWSPDGALFGVAYSRYIVQIYSYHGGDELRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFCIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGALLAVSANENGIKILANGDGIRLLRSLESSMYDASRTSDAMAKPTINPISAAAATSASLAERAPSVVAIAGMNGDARNLSDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVTKISRLIYTNSGHAILALASNAIHLLWKWARSDRNSSGKATASVPPQLWQPSSGILMTNDISDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQISVWNTDGWEKQKTRFLQFPAGRTPSAQADTRVQFHQDQIRFLVVHETQLAIYEATKLDCLKQWFPQNSAAPISHATFSCDSQLIYASFLDATVCVFSASNLRLRCRINPTVYLSASVSSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGRWGVPPPIENGSASNVAAPSVGASSEEAQR* 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2121 1132 SMART WD40_4 911 950 IPR001680 GO:0005515
Dod10g2121 1132 SMART WD40_4 450 491 IPR001680 GO:0005515
Dod10g2121 1132 SMART WD40_4 538 581 IPR001680 GO:0005515
Dod10g2121 1132 SMART WD40_4 344 383 IPR001680 GO:0005515
Dod10g2121 1132 SMART WD40_4 494 535 IPR001680 GO:0005515
Dod10g2121 1132 SMART WD40_4 828 865 IPR001680 GO:0005515
Dod10g2121 1132 SMART WD40_4 584 624 IPR001680 GO:0005515
Dod10g2121 1132 SMART WD40_4 868 908 IPR001680 GO:0005515
Dod10g2121 1132 SMART WD40_4 1056 1096 IPR001680 GO:0005515
Dod10g2121 1132 SMART WD40_4 1002 1043 IPR001680 GO:0005515
Dod10g2121 1132 SMART WD40_4 405 444 IPR001680 GO:0005515
Dod10g2121 1132 MobiDBLite consensus disorder prediction 1103 1132 - -
Dod10g2121 1132 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1132 IPR027728 GO:0006355
Dod10g2121 1132 SMART Lish 4 36 IPR006594 GO:0005515
Dod10g2121 1132 Gene3D - 549 755 IPR015943 GO:0005515
Dod10g2121 1132 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 978 1114 IPR011044 -
Dod10g2121 1132 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Dod10g2121 1132 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Dod10g2121 1132 MobiDBLite consensus disorder prediction 1115 1132 - -
Dod10g2121 1132 Pfam WD domain, G-beta repeat 457 491 IPR001680 GO:0005515
Dod10g2121 1132 Pfam WD domain, G-beta repeat 917 950 IPR001680 GO:0005515
Dod10g2121 1132 Gene3D - 326 544 IPR015943 GO:0005515
Dod10g2121 1132 ProSitePatterns Trp-Asp (WD) repeats signature. 478 492 IPR019775 -
Dod10g2121 1132 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 346 570 IPR011047 -
Dod10g2121 1132 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 918 950 - -
Dod10g2121 1132 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 500 1048 IPR011047 -
Dod10g2121 1132 PANTHER TOPLESS-LIKE PROTEIN 1 1132 - -
Dod10g2121 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 500 IPR001680 GO:0005515
Dod10g2121 1132 SMART ctlh 34 92 IPR006595 -
Dod10g2121 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 918 959 IPR001680 GO:0005515
Dod10g2121 1132 Gene3D - 828 1104 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g2121 Dod-Chr10 43079348 43086931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2121 455 668 Miscellaneous Gene Families AT5G08390 23.288 2.50e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2121 - - gmx:100790282 2124.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2472 06 53616160 53623819 Dod10g2121 10 43079348 43086931 ECH
Dod10g2121 10 43079348 43086931 Dod10g2121 10 43079348 43086931 ECH