Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2472 ATGTCTTCTCTGAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTGGATGAGGAAAAGTTCAAGGAGACTGTTCACAAGCTTGAACAGGAGTCTGGATTTTTCTTCAACATGAAATATTTTGAGGATGAAGTGCACAATGGCAACTGGGATGAGGTTGAGAAGTACTTATCTGGTTTCACAAAAGTAGATGATAATAGGTACTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTGGAGGCATTAGATAAGCCTGACCGGGCTAAGGCTGTAGAAATATTAGTGAAGGATTTGAAAGTGTTTGCCACATTTAATGAAGAACTGTTCAAGGAAATCACGCAGCTTCTGACATTGGAGAATTTTAGGGAGAATGAGCAATTGTCTAAGTATGGTGATACTAAGTCTGCTAGAGCTATCATGTTGGTTGAGCTCAAAAAGCTCATTGAAGCAAATCCCTTGTTTCGCGACAAATTGCAATTTCCCAGCCTTAAGAACTCGAGGTTGCGAACTCTCATCAATCAGAGCTTGAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCTAATCCTGATATAAAAACACTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGAGCTCCTTCTCCAGCTAATAATCCGTTACTAGGGTCCTTACCAAAGGCTGGTGGATTTCCTCCTCTTGGTGCACATGGGCCTTTTCAACCTACTCCAGCACCAGTGCCAACACCCTTGGCTGGCTGGATGTCAAATCCTACCACTGTGGCGCATCCTGCGGTTTCTGGAGGTGGAGCTATAGGGCTTGGTGCTCCATCAATCCCTGCTGCTTTGAAGCATCCCAGGACCCCTCCTACTAATCCTTCTGTTGACTATCCATCTGGTGACTCAGATCATGTTGCTAAGAGAACAAGGCCAATGGGAGTATCAGATGAGGTAAATCTACCTGTCAATGTGTTGTCAGCAACATTCCCAGGTCACGGTCATGGTCAGACTTTTCATGCACCTGATGACTTGCCGAAGACCGTTATGCGAACTCTAAATCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAATCCAACAGTCTTTACTTCTTGTTGGCACAAATGTGGGGGACATCGCTTTGTGGGAGGTGGGCTGTAGGGAGCGACTGGTCTTGAAGAACTTCAAAGTTTGGGACCTTAGTGCATGTTCAATGCCATTTCAGGCTGCTCTTGTCAAAGATCCAATTGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGCACTTTATTCGGAGTTGCTTACTCGAGGCACATTGTTCAGATATACTCTTATCATGGGGCAGATGATGTTAGACAGCACCTGGAGATTGATGCTCATGTTGGTGGGGTAAATGATCTTGCGTTTTCCCATCCAAATAAGCAACTATGCGTGATAACCTGTGGGGATGATAAGACCATCAAGGTGTGGGATGCTGCTACGGGTGCAAAGCAGTATACCTTTGAAGGCCATGAGGCTCCGGTTTATTCTGTCTGCCCGCATTATAAAGAAAACATTCAGTTCATCTTTTCAACAGCACTAGATGGAAAGATAAAAGCGTGGTTGTATGACAATTTGGGATCTCGTGTTGATTATGATGCTCCTGGTCGTTGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGGCTCTTTTCATGTGGGACAAGCAAAGAAGGGGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGGACTTATCAAGGATTCCGTAAGCGATCTTTGGGTGTTGTGCAATTTGATACCACCAAAAATCGATTTTTGGCTGCTGGTGATGATTTCAACATTAAATTCTGGGATATGGACAATGTTCAACTTTTGACAACTGTTGATGCTGATGGGGGTCTACCTGCAAGCCCGCGTATCCGATTCAACAAAGATGGAACACTTTTAGCCGTATCTGCAAATGAGAATGGAATCAAAATTTTAGCCAATGCAGATGGCATTCGCCTGTTGCGTACATTAGAGAGTTCTTTATATGATGCATCCAGAACATCAGAAGCCATGGCAAAGCCTACAATAAATCCAATTTCTGCTGCTGCTGCAACTAGTGCTGCGCTTGCAGAGAGGGCCTCTTCTGTAGTAGCTATTGCCGGAATGAATGGGGATGCACGAGGTGATGTTAAACCAAGAATAAGTGAAGAATCCAATGACAAGTCGAAAATATGGAAGCTCACTGAAATCAATGAACCCTCTCAATGTAGATCATTGAAGCTACCTGATAATGTTAGAGTACCTAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTAGCACTAGCATCAAATGCCATTCACCTGCTCTGGAAATGGCAGCGAAATGACCGTAGTTCATCTGGCAAGGCCACTGCCAGCATGCAACCTCAGTTGTGGCAACCATCAAGTGGCATCCTGATGACTAATGACATCGCTGATAGCAACCCCGAGGATGCTGTACCCTGCTTTGCTCTGTCCAAAAATGATTCTTATGTAATGTCCGCATCAGGAGGGAAGATATCCCTATTCAACATGATGACTTTTAAGACAATGACAACTTTCATGCCTCCGCCACCTGCAGCAACCTTTCTTGCTTTTCATCCGCAGGATAACAATATTATAGCTATAGGCATGGATGATTCCTCCATTCAGATATACAACGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAGGGCCATACCAAAAGAATAACTGGTCTTGCTTTCTCTCATACATTGAATGTGCTAGTTTCATCTGGAGCAGATGCTCAGATTTGTGTGTGGAATACTGATGGATGGGAAAAGCAAAAAAGCAGATTGTTGCAGCTTCCTCCTGGAAGGACCCCATCAGCACAGGCCGATACCCGAGTACAGTTCCATCAGGATCAGATACATTTCTTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAGCCACAAAACTAGAAGGATTAAAGCAGTGGTTCCCGCGGGATTCTGCTGCACCCATATCGCATGCAACTTTCTCGTGTGATAGCCAGCTGATATATGCCAGCTTTTTAGACGCAACAGTCTGTGTTTTTAGTGCTTCAAACCTCAGATTACGATGTCGCATCAATCCTTCTGCTTATCTTCCTGCAAGTGTCAGTTCCAATGTACAGCCACTTGTAATTGCGGCGCATCCGCAAGAACCGAATCAGTTTGCTGTAGGGTTGTCGGATGGTGGAGTTCATGTCTTTGAGCCCCTTGAATCTGAAGGCAAGTGGGGTGTGCCTCCTCCAGTTGAGAATGGCTCAGCAAGCAATGTGGCAGCCACTACAGGTGGACCCTCTTCAGATCAACCCCAAAGATGA 3390 0.4437 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKPDRAKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHPAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVAKRTRPMGVSDEVNLPVNVLSATFPGHGHGQTFHAPDDLPKTVMRTLNQGSSPMSMDFHPIQQSLLLVGTNVGDIALWEVGCRERLVLKNFKVWDLSACSMPFQAALVKDPIVSVNRVIWSPDGTLFGVAYSRHIVQIYSYHGADDVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFNIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANENGIKILANADGIRLLRTLESSLYDASRTSEAMAKPTINPISAAAATSAALAERASSVVAIAGMNGDARGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPDNVRVPKISRLIYTNSGNAILALASNAIHLLWKWQRNDRSSSGKATASMQPQLWQPSSGILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHTLNVLVSSGADAQICVWNTDGWEKQKSRLLQLPPGRTPSAQADTRVQFHQDQIHFLVVHETQLAIYEATKLEGLKQWFPRDSAAPISHATFSCDSQLIYASFLDATVCVFSASNLRLRCRINPSAYLPASVSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPVENGSASNVAATTGGPSSDQPQR* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2472 1129 SMART ctlh 34 92 IPR006595 -
Dod06g2472 1129 SMART Lish 4 36 IPR006594 GO:0005515
Dod06g2472 1129 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Dod06g2472 1129 Gene3D - 573 685 IPR015943 GO:0005515
Dod06g2472 1129 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 916 948 - -
Dod06g2472 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 916 957 IPR001680 GO:0005515
Dod06g2472 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 602 633 IPR001680 GO:0005515
Dod06g2472 1129 ProSitePatterns Trp-Asp (WD) repeats signature. 478 492 IPR019775 -
Dod06g2472 1129 MobiDBLite consensus disorder prediction 1111 1129 - -
Dod06g2472 1129 Pfam WD domain, G-beta repeat 915 948 IPR001680 GO:0005515
Dod06g2472 1129 Pfam WD domain, G-beta repeat 457 491 IPR001680 GO:0005515
Dod06g2472 1129 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Dod06g2472 1129 SUPERFAMILY WD40 repeat-like 342 666 IPR036322 GO:0005515
Dod06g2472 1129 Gene3D - 816 1101 IPR015943 GO:0005515
Dod06g2472 1129 Gene3D - 335 572 IPR015943 GO:0005515
Dod06g2472 1129 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1129 - -
Dod06g2472 1129 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 522 1095 IPR011047 -
Dod06g2472 1129 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1129 IPR027728 GO:0006355
Dod06g2472 1129 MobiDBLite consensus disorder prediction 1096 1129 - -
Dod06g2472 1129 SMART WD40_4 826 863 IPR001680 GO:0005515
Dod06g2472 1129 SMART WD40_4 584 624 IPR001680 GO:0005515
Dod06g2472 1129 SMART WD40_4 1054 1093 IPR001680 GO:0005515
Dod06g2472 1129 SMART WD40_4 494 535 IPR001680 GO:0005515
Dod06g2472 1129 SMART WD40_4 1001 1041 IPR001680 GO:0005515
Dod06g2472 1129 SMART WD40_4 405 444 IPR001680 GO:0005515
Dod06g2472 1129 SMART WD40_4 450 491 IPR001680 GO:0005515
Dod06g2472 1129 SMART WD40_4 344 383 IPR001680 GO:0005515
Dod06g2472 1129 SMART WD40_4 538 581 IPR001680 GO:0005515
Dod06g2472 1129 SMART WD40_4 866 906 IPR001680 GO:0005515
Dod06g2472 1129 SMART WD40_4 909 948 IPR001680 GO:0005515
Dod06g2472 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 500 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2472 Dod-Chr6 53616160 53623819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2472 455 668 Miscellaneous Gene Families AT5G08390 23.744 1.50e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2472 - - gmx:100795759 2129.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2472 06 53616160 53623819 Dod10g2121 10 43079348 43086931 ECH
Dod06g2472 06 53616160 53623819 Dod06g2472 06 53616160 53623819 ECH