Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1946 ATGACACTGCTCAGAACCATCTTCATCAAGCACCACCACCGTCTCTTCAACCCAAAATGCATCTTCGCTTCATCTCCCTCTCTCCTTTCCTTTCGCTCCCGCCATTCCCACAACTCCTCCGCCACCGCCGATTCTCCACAACTCCAACAACCACCAACCGACGACTCAACAACCCCGCCCAACTCCTGGAGCATATACGGCGACGTTTTTGACAATCTCAATATTCGCACCCATTTCCAGCACCGCACACCCAACCATATCAGTGATCACGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAACAAGCAAAAGAAGAACAAGAAGTTGAAGTTGAAGAATTTCGTTATGCAATACCAAAGCCAAGTGTGAGGAGAGGATTGAAGACCACTTCAAACCCACTAGTTGGAGGCGAAGCTCTTCCCTCGAGCATCGTTAGGACGAGGAAAAGCAGCGTGAAGGTGAAGAAGCAGTGGGTTTGCTGCAATTGCGGTTTTGCAGCTGGGCAATGGTGGGGGATATGCCCCACATGCGAGTTATCTGGGACCATGAAGGAGTTTCACGAGGCCAAGTCCACGGATTCAGATAACAAGGCCAAAAGTGGGTTATCAGTTTCAGAGGATGCAGTGGGATTGTGGCTCCCACAGCATGCTTCTGATTTGCGCCCCATCAAATTGGAGGAGGTCAATCAGGGATTCAATCACCTGCATTGGAGACTCCCTTTGTCTGGTCCTTTTGGAATTGAAGTGTCTACGGTGCTTGGCGGTGGTCTTGTACCAGGCTCTTTGACTTTAGTTGGTGGTGACCCTGGTGTTGGGAAGAGTACTCTGTTGTTGCAGTTGGCAGCAGAATTAGCAAAAGCTTGCAATGACAGCAAAGCATCTCCAGTTTTATATGTATCTGGCGAAGAGAGCCTTCAGCAAATTGGTAACAGAGCAGAACGCCTTGGGATTAAATCAGATATTTATCTATATTCAAGTACGGATATTGAGGACATACTGAAGAAAGCTCAGCTTCTTTCCCCTCGTGCTCTGGTTGTTGATTCAATACAAACTGTTTACTTGAAAGGACTATTAGGAAGTGCTGGAGGGATTTTGCAGGTGAAGGAATGTGCTGCAGCTTTGATGCGATTTGCAAAAACAACTAACATCCCAGTTCTTTTGATTGGACATGTGACAAAATTAGGAGAAATTGCTGGACCTCGTGTCTTGGAGCATATAGTAGATGTTGTTTTGTATATGGAAGGCGAGAAGTGCTCTTCCTATCGTATGCTTCGTGCTGTGAAAAATCGGTTTGGGTCCACTGATGAGCTTGGAGTTTTTGAGATGTTACAATCAGGACTGCAGGCTGTTTCAAATGCCAGTGAAATATTTCTCAGTGAGCAGCACACTGATTCAGAATTTTTAGCTGGACTAGCTATTACTGTACTAATGGATGGTTCAAGAACTTTCTTAATTGAAATTCAGGCACTTTGCGTTTCACCTTGCCCAACTCAAACGTCATCATTTCCAGATCAATTAGTTAACGGGATCAAATCAAAAAGAGCTAATCTGATCAAATGTGTTCTTGTAAAGCAAGCAGGTCTTCAGCTCCAAGATAATGCTGTGTTTTTGAATGTTATTAGTGGATGGACAATTACAGAGACTGCTGGGGATCTTGCGATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTTCCCTATCCCAAAAGGTGTTGCATTCATAGGTGAAATTGGCCTCGGTGGAGAGCTGCGCATGGTTCCTAGAATTGAGAAAAGGGTATACACAGTAGCAAAGTTGGGTTACAAACTTTGTGTTGTACCAAAGCAAGCTGAAAAGGTTATAGAAAGCGAAGGTCTAGGAAACATGAGAGTTATAGGTTGCAAAAATCTGAGAGAGGTTATTAACGCTGTATTCACTGCAAAATGA 1926 0.4486 MTLLRTIFIKHHHRLFNPKCIFASSPSLLSFRSRHSHNSSATADSPQLQQPPTDDSTTPPNSWSIYGDVFDNLNIRTHFQHRTPNHISDHEEEEEEEEEEEQAKEEQEVEVEEFRYAIPKPSVRRGLKTTSNPLVGGEALPSSIVRTRKSSVKVKKQWVCCNCGFAAGQWWGICPTCELSGTMKEFHEAKSTDSDNKAKSGLSVSEDAVGLWLPQHASDLRPIKLEEVNQGFNHLHWRLPLSGPFGIEVSTVLGGGLVPGSLTLVGGDPGVGKSTLLLQLAAELAKACNDSKASPVLYVSGEESLQQIGNRAERLGIKSDIYLYSSTDIEDILKKAQLLSPRALVVDSIQTVYLKGLLGSAGGILQVKECAAALMRFAKTTNIPVLLIGHVTKLGEIAGPRVLEHIVDVVLYMEGEKCSSYRMLRAVKNRFGSTDELGVFEMLQSGLQAVSNASEIFLSEQHTDSEFLAGLAITVLMDGSRTFLIEIQALCVSPCPTQTSSFPDQLVNGIKSKRANLIKCVLVKQAGLQLQDNAVFLNVISGWTITETAGDLAIAAAICSSFLEFPIPKGVAFIGEIGLGGELRMVPRIEKRVYTVAKLGYKLCVVPKQAEKVIESEGLGNMRVIGCKNLREVINAVFTAK* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1946 641 MobiDBLite consensus disorder prediction 32 63 - -
Dod10g1946 641 Pfam Rubredoxin metal binding domain 158 185 IPR041166 -
Dod10g1946 641 ProSiteProfiles RecA family profile 1. 238 391 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Dod10g1946 641 MobiDBLite consensus disorder prediction 90 107 - -
Dod10g1946 641 Gene3D - 467 641 IPR014721 -
Dod10g1946 641 SUPERFAMILY Ribosomal protein S5 domain 2-like 428 638 IPR020568 -
Dod10g1946 641 Gene3D - 249 443 IPR027417 -
Dod10g1946 641 PRINTS DNA repair protein radA signature 160 184 - -
Dod10g1946 641 PRINTS DNA repair protein radA signature 386 414 - -
Dod10g1946 641 PRINTS DNA repair protein radA signature 347 371 - -
Dod10g1946 641 PRINTS DNA repair protein radA signature 421 447 - -
Dod10g1946 641 PRINTS DNA repair protein radA signature 251 279 - -
Dod10g1946 641 Pfam Subunit ChlI of Mg-chelatase 523 609 - -
Dod10g1946 641 Pfam AAA domain 253 395 - -
Dod10g1946 641 TIGRFAM sms: DNA repair protein RadA 153 633 IPR004504 GO:0003684|GO:0005524|GO:0006281
Dod10g1946 641 SMART AAA_5 259 417 IPR003593 -
Dod10g1946 641 Coils Coil 87 115 - -
Dod10g1946 641 PANTHER DNA REPAIR PROTEIN RADA 1 639 - -
Dod10g1946 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 443 IPR027417 -
Dod10g1946 641 MobiDBLite consensus disorder prediction 83 110 - -
Dod10g1946 641 PANTHER DNA REPAIR-LIKE PROTEINRADA 1 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1946 Dod-Chr10 41264956 41278887 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1946 K04485 - gmx:100791181 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1946 10 41264956 41278887 Dod10g1946 10 41264956 41278887 ECH
Dod10g1946 10 41264956 41278887 Dod06g2661 06 56680281 56687322 PCT