Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2661 ATGCTTTCCTTCACCTACCCTCGTTTCCAATTTTTCCCTCCGAATCCTTCATTCCCACAAAATGCAAGCTTTCGCCCTTTTGACACCCGACAAGGCCCATTCAGTATCACTACCAATGCAAACCCTTCCTCTCATGGCATGCAACACAACCATTCTTCTTCTTCTGACCACAAAGTTGAAGACTTTGATAGAGAAATGGCAAGTGTGAGAGTAAAGGGTACAAACCCAGTTCATGGAATTGGTAGTGGTGGCGCTGTCAGGAAGAAAAAGGGGAAGGAGAAAGTTCACTGGGTTTGCAGCAATTGTGGGTACAGTGCAGGGCAGTGGTGGGGTGTGTGCAGATCGTGCAATGAAGCTGGAACCATGAAGGAGTTTCATGAGCCGAAAACAAGTGATGGTGATGGCAACAAGGTGAGTGGTTTTGCTGTTTTGGAGGGGGCTTTAAGGTCATGGCTACCTCAGCAGGAAGGTGAGTTGCGACCCTTGAGATTGGCTGAGGTAAACAGGGGACTTGATCAGCTTCGTTGGAGAATTCCTTTAAATGGTCCCTGTGGAAATGAAGTTTCTAGAGTTCTTGGTGGGGGCCTTGTACCAGGCTCCTTGACTTTAGTAGGTGGTGATCCTGGAGTTGGGAAGAGCACTCTGCTGTTGCAGATTGCTGCAATGATCACAGAGGAGTGCAGTGATGGTGAAGCATCTCCAGTTGTGTATATTTCTGGCGAAGAGAGTATTGAGCAAATTGGTAACAGAGCAGATCGCCTTGGGATTACGTCGGACATTTATTTGTACTCAAGTAATGATATTGAGGACATTTTGAAGAAAGTTCAGCATCTCTCCCCTCGGGCTCTAGTTATTGATTCAATACAAACTGTTTATTTGAAAGGAATAATGGGAAGTCCTGGAGGGATTATGCAGGTGAAAGAATGTACTTCAGCTTTGCTGCGATTTGCAAAGACAACAAACATCCCAGTTCTTTTGATTGGACATGTGACTAAATCTGGAGACATAGCAGGACCTCGTGTCTTGGAGCATATTGTAGATGTTGTTTTGTATATGGAAGGTGAGAGGTACTCTTCCCATCGTATGCTTCGAGCTGTGAAAAATCGATTTGGATCCACTGATGAGCTTGGAGTTTTTGAAATGTCACATTCAGGACTACAGGCTGTTTCAAATGCCAGTGAAATGTTTCTCAGTGAACAACACTTGGATTCAGAAATCTTGGCTGGGCTAGCTGTCGCTGTGATAATGGATGGCTCCCGAACATTCCTTATTGAAATTCAGGCACTTTGTCTTTCTGGTTCAACAGGTTCAAGGCAAGTTAATGGGATCCAAGCAAGTAGAGCTGATATGATCATATCTGTTCTTATAAAGCAGGCTGGCCTTCGTCTACAAGAAAATGCTGTGTTTTTGAATGTTGTTAGTGGATTGACACTGAGCGAGACTGCAGGAGATCTTGCTATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAAGTGCCAATTCGAAATGACATTGCATTCATTGGTGAAATTGGCCTTGGTGGTGAGCTTCGCATGGTTCCTAGAATGGAGAAACGAGTATGCACAGTTGCGAAATTGGGTTACAGAATGTGCATCGTACCAAAGGCAGCTGAAAAAACTCTAGGGACTGAAGGTTTAGAAAAGATGACAGTTGTCGGTTGCAGGAATCTGAAAGACGTTATTAACAGTGTCTTTCCCCGGATAATGAAAAGAAGCTAG 1737 0.4444 MLSFTYPRFQFFPPNPSFPQNASFRPFDTRQGPFSITTNANPSSHGMQHNHSSSSDHKVEDFDREMASVRVKGTNPVHGIGSGGAVRKKKGKEKVHWVCSNCGYSAGQWWGVCRSCNEAGTMKEFHEPKTSDGDGNKVSGFAVLEGALRSWLPQQEGELRPLRLAEVNRGLDQLRWRIPLNGPCGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQIAAMITEECSDGEASPVVYISGEESIEQIGNRADRLGITSDIYLYSSNDIEDILKKVQHLSPRALVIDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGERYSSHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFLSEQHLDSEILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQVNGIQASRADMIISVLIKQAGLRLQENAVFLNVVSGLTLSETAGDLAIAAAICSSFLEVPIRNDIAFIGEIGLGGELRMVPRMEKRVCTVAKLGYRMCIVPKAAEKTLGTEGLEKMTVVGCRNLKDVINSVFPRIMKRS* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2661 578 Pfam Rubredoxin metal binding domain 97 124 IPR041166 -
Dod06g2661 578 PANTHER DNA REPAIR PROTEIN RADA 84 573 - -
Dod06g2661 578 ProSiteProfiles RecA family profile 1. 174 330 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Dod06g2661 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 381 IPR027417 -
Dod06g2661 578 Gene3D - 187 387 IPR027417 -
Dod06g2661 578 SUPERFAMILY Ribosomal protein S5 domain 2-like 367 571 IPR020568 -
Dod06g2661 578 Pfam AAA domain 191 334 - -
Dod06g2661 578 SMART AAA_5 198 356 IPR003593 -
Dod06g2661 578 TIGRFAM sms: DNA repair protein RadA 92 557 IPR004504 GO:0003684|GO:0005524|GO:0006281
Dod06g2661 578 PANTHER DNA REPAIR-LIKE PROTEINRADA 84 573 - -
Dod06g2661 578 Pfam Subunit ChlI of Mg-chelatase 452 542 - -
Dod06g2661 578 MobiDBLite consensus disorder prediction 38 58 - -
Dod06g2661 578 PRINTS DNA repair protein radA signature 190 218 - -
Dod06g2661 578 PRINTS DNA repair protein radA signature 325 353 - -
Dod06g2661 578 PRINTS DNA repair protein radA signature 286 310 - -
Dod06g2661 578 PRINTS DNA repair protein radA signature 360 386 - -
Dod06g2661 578 PRINTS DNA repair protein radA signature 435 458 - -
Dod06g2661 578 PRINTS DNA repair protein radA signature 99 123 - -
Dod06g2661 578 Gene3D - 406 577 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2661 Dod-Chr6 56680281 56687322 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2661 K04485 - gmx:100794165 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2661 06 56680281 56687322 Dod06g2661 06 56680281 56687322 ECH
Dod10g1946 10 41264956 41278887 Dod06g2661 06 56680281 56687322 PCT