Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1929 ATGAACGGTGGCGATGAGGTCGTCGCAGCTCCGTCGGGTCCACCGCCCTCTCTGGAGTGGAAATTCTCGCAGGTTTTCGGCGAGCGCACTGCCGGTGAAGAGGTTCAGGAAGTGGACATCATTTCTGCTATTGAATTTGACAAATCTGGTGATCATCTTGCTACTGGCGATCGTGGTGGTCGAGTTGTTCTCTTTGAGAGAACTGATACAAAAGATCTTGGTGGATCAAGGAGGGATATGGAGAGGATGGACTACCCTATTAGTAGGCATCCTGAGTTCCGCTATAAAACAGAGTTTCAGAGCCACGAGCCTGAGTTTGACTATCTCAAGAGCTTGGAAATAGAAGAGAAAATCAACAAAATCAGATGGTGCCAAACAGCTAATGGAGCCCTCTTCCTTCTTTCTACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAAGTCAAGAAAATTTCTGATATGAATGTTGACCCTTCAAAAGCAATGGGAAATGGCTCTACTGGTAGTTCTAGCAGTTCTAGGGCATACCTTGCAAATGGAGGATCTGCAGATACATCATACAATTATCTTAGCAATGACTTCTCATTTCCACCAGGAGGCATTCCATCACTAAAATTACCTGTGGTAAGTAGCCATGAGACCAGTATGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATCAATTCTATTTCAAATAACAGTGATGGCGAAACTTTCATATCAGCCGATGATCTGCGTATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGCTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAAGATCTGACAGAGGTAATAACATCAGCAGAATTCCACCCTACACACTGTAATATGTTGGCGTATAGCAGTTCGAAGGGTTCAATCCGTCTTGTTGACTTGCGGCAATCAGCATTATGCGATTCTCATGCCAAATTGTTTGAGGAACAGGAGGCCCCTGGCTCCAGATCATTTTTCACCGAGATTATTGCTTCTATCTCTGACATAAAATTTGGGAAGGATGGGAGATACATACTTAGTCGTGATTACATGACTCTAAAGTTATGGGACATTAATATGGATTCAGGCCCTGTTGCAACTTTCCAGGTTCATGAGTATCTAAGACCTAAGCTTTGTGATTTATATGAAAATGATTCAATTTTTGACAAGTTTGAGTGTTGTCTAAGTGGTGATGGATTGCGTGTAGCAACTGGTTCTTACAGCAATCTATTCCGTGTGTTTGGTTGTGCCCCGGGGAGTGCTGAGGCTACAACATTGGAAGCCAGTAAAAATCCGATGAGACGACAAGTTCCAACCCCTTCGTCAAGGCAAAGATTGCTTGGGAATAGTATAACCCGCGTTGTAAGACGAGGAGCAGAAACCCCTAGTGTTGATGCGAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTGGCATGGCATCCAACGGAAAATTCAATTGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCGTAA 1539 0.4263 MNGGDEVVAAPSGPPPSLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDLGGSRRDMERMDYPISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISDMNVDPSKAMGNGSTGSSSSSRAYLANGGSADTSYNYLSNDFSFPPGGIPSLKLPVVSSHETSMVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSAEATTLEASKNPMRRQVPTPSSRQRLLGNSITRVVRRGAETPSVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1929 512 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 512 IPR000009 GO:0000159|GO:0019888
Dod10g1929 512 Gene3D - 78 510 IPR015943 GO:0005515
Dod10g1929 512 SUPERFAMILY WD40 repeat-like 39 504 IPR036322 GO:0005515
Dod10g1929 512 MobiDBLite consensus disorder prediction 162 177 - -
Dod10g1929 512 Pfam WD domain, G-beta repeat 223 259 IPR001680 GO:0005515
Dod10g1929 512 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 229 243 IPR018067 -
Dod10g1929 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 398 424 IPR000009 GO:0000159|GO:0019888
Dod10g1929 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Dod10g1929 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Dod10g1929 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 259 286 IPR000009 GO:0000159|GO:0019888
Dod10g1929 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Dod10g1929 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 316 343 IPR000009 GO:0000159|GO:0019888
Dod10g1929 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 372 397 IPR000009 GO:0000159|GO:0019888
Dod10g1929 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 344 371 IPR000009 GO:0000159|GO:0019888
Dod10g1929 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 481 510 IPR000009 GO:0000159|GO:0019888
Dod10g1929 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 231 258 IPR000009 GO:0000159|GO:0019888
Dod10g1929 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 287 315 IPR000009 GO:0000159|GO:0019888
Dod10g1929 512 MobiDBLite consensus disorder prediction 158 177 - -
Dod10g1929 512 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Dod10g1929 512 PIRSF PPA2_B55 11 512 IPR000009 GO:0000159|GO:0019888
Dod10g1929 512 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 512 - -
Dod10g1929 512 SMART WD40_4 220 259 IPR001680 GO:0005515
Dod10g1929 512 SMART WD40_4 329 367 IPR001680 GO:0005515
Dod10g1929 512 SMART WD40_4 105 145 IPR001680 GO:0005515
Dod10g1929 512 SMART WD40_4 371 425 IPR001680 GO:0005515
Dod10g1929 512 SMART WD40_4 270 310 IPR001680 GO:0005515
Dod10g1929 512 SMART WD40_4 31 66 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1929 Dod-Chr10 40946588 40954850 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1929 K04354 - gmx:100799449 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2698 06 57819320 57833240 Dod10g1929 10 40946588 40954850 ECH
Dod10g1929 10 40946588 40954850 Dod10g1929 10 40946588 40954850 ECH
Dod10g1929 10 40946588 40954850 Dod06g2698 06 57819320 57833240 PCT