Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2698 ATGAACGGTGGCGATGAGGTCGTCGCAGCTACCGCGGGTCCACCGCAACCGCTGGAGTGGAAATTCTCGCAGGTGTTCGGAGAACGTGCGGCAGGGGAAGAAGTCCAGGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGGGATCGTGGTGGCCGGCTAGTTCTTTTTGAGAGGACAGATACAAAAGATCATGGTGTACCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTTAAGAGCTTGGAAATAGAAGAGAAAATCAACAAAATCAGATGGTGCCAAACAGCCAATGGGGCTCTGTTCCTTTTATCGACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGACATGAATATTGACCCTTCAAAAGCAATGATAAATGGCTCTAGTTCAAGTAATTCCAGTATCCCTAGGCCATCTCTTGCCAATGGAGGTTTCTCAATTCCACCAGGAGGCATACCTTCCCTCAAATTACCGTTGGTACTAACCAGCAATGAAACCAGTCTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATCAATTCTATTTCAAATAACAGTGATGGTGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGCTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTAACTGAGGTTATAACATCAGCAGAATTTCACCCAACACATTGTAATACATTGGCATACAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCGCTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCTGGCTCCAGATCATTTTTCACAGAGATTATTGCTTCTATCTCAGACATAAAATTTGGGAAGGATGGAAGATATATACTTAGTCGTGATTACATGACTCTGAAGTTATGGGACATCAACATGGATTCTGGTCCAGTCGCAACATTCCAGGTTCACGAGTATTTAAGGCCAAAGCTTTGTGATTTATATGAAAACGATTCAATTTTTGACAAGTTTGAGTGTTGTCTGAGTGGTGATGGATTGCGTGTTTCAACGGGTTCTTACAGGTTCGTGATTCCAACTCAACCCGTCTCTGCTTCTGTTATTACTAAACCTGCGTCTGACTATTTTGTTTCTTTCGATACCAGCAATCTATTTCGTGTGTTTGGTTGTGCCCCGGGTAGTACTGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGACGGCAAGTTCCAACCCCTTCAAGACCTTCTAGATCACTGGGAACTGGTATAACACGAGTTGTACGACGTGGAGCTGAAAGCAGTGTTGTTGATGCAAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTACACCTAGCTTGGCACCCAACTGAAAATTCAATTGCTTGTGCTGCTGCAAATAGCTTATACATGTACTATGCTTGA 1590 0.4208 MNGGDEVVAATAGPPQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRLVLFERTDTKDHGVPRRDLERMDYSIGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISDMNIDPSKAMINGSSSSNSSIPRPSLANGGFSIPPGGIPSLKLPLVLTSNETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVSTGSYRFVIPTQPVSASVITKPASDYFVSFDTSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPSRPSRSLGTGITRVVRRGAESSVVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2698 529 SUPERFAMILY WD40 repeat-like 39 408 IPR036322 GO:0005515
Dod06g2698 529 Pfam WD domain, G-beta repeat 213 249 IPR001680 GO:0005515
Dod06g2698 529 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 409 - -
Dod06g2698 529 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 409 IPR000009 GO:0000159|GO:0019888
Dod06g2698 529 Gene3D - 88 527 IPR015943 GO:0005515
Dod06g2698 529 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Dod06g2698 529 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 277 305 IPR000009 GO:0000159|GO:0019888
Dod06g2698 529 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Dod06g2698 529 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Dod06g2698 529 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 498 527 IPR000009 GO:0000159|GO:0019888
Dod06g2698 529 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 249 276 IPR000009 GO:0000159|GO:0019888
Dod06g2698 529 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 306 333 IPR000009 GO:0000159|GO:0019888
Dod06g2698 529 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 221 248 IPR000009 GO:0000159|GO:0019888
Dod06g2698 529 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 362 387 IPR000009 GO:0000159|GO:0019888
Dod06g2698 529 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 388 414 IPR000009 GO:0000159|GO:0019888
Dod06g2698 529 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 334 361 IPR000009 GO:0000159|GO:0019888
Dod06g2698 529 SMART WD40_4 260 300 IPR001680 GO:0005515
Dod06g2698 529 SMART WD40_4 319 357 IPR001680 GO:0005515
Dod06g2698 529 SMART WD40_4 210 249 IPR001680 GO:0005515
Dod06g2698 529 SMART WD40_4 105 145 IPR001680 GO:0005515
Dod06g2698 529 SMART WD40_4 31 66 IPR001680 GO:0005515
Dod06g2698 529 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 434 529 - -
Dod06g2698 529 PIRSF PPA2_B55 9 529 IPR000009 GO:0000159|GO:0019888
Dod06g2698 529 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Dod06g2698 529 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 219 233 IPR018067 -
Dod06g2698 529 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 434 529 IPR000009 GO:0000159|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2698 Dod-Chr6 57819320 57833240 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2698 K04354 - gmx:100799449 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2698 06 57819320 57833240 Dod10g1929 10 40946588 40954850 ECH
Dod06g2698 06 57819320 57833240 Dod06g2698 06 57819320 57833240 ECH
Dod10g1929 10 40946588 40954850 Dod06g2698 06 57819320 57833240 PCT