Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1818 ATGCCAACTATTTTGCTAAGGATTTTCCTTCTTTACAACGTTGTAAATTCATTCCTCCTTTGTCTGGTCCCCAAGAAGCTGAGACCCTTCCTTCCCCGTTCTTGGGTCCCCCACCATCAAACCAACCTCATCACCGCAGCAACCACTTCACCTTCGAATTCTTCTTCATCAAGGGCCGTTATTATCACCAACAGAATAATAATGGACCCCAGTGAGCTCAAGCGCGTTTTCGAGATGTTTGACCGAAACGGCGATGGAAGGATCACCAAGAAGGAGCTAAGTGACTCCCTCGAGAACGTCGGGATCTTCATACCCGACATGGAGCTCACTCAGATGATCGAGAAGATCGATGCTAACGGCGATGGTTGCGTGGACATTGATGAGTTTGGGCAGCTTTACCTGTCCATCATGGACGAGCATGATGAGGAAGATGACATGATGGAAGCATTCAACGTGTTCGACCAGAACGGTGATGGGTTCATCACCGTTGATGAGTTGAGGAGAGTGTTGTCTTCTATGGGGCTGAAGCAAGGGAGAACGGTGGAGGACTGCAAGAAGATGATCATGAAGGTGGACGTTGATGGTGATGGCATGGTCAACTTCAAGGAGTTCAAGCATATGATGAAGGGTGGAGGATTCAGTGCTCTCAGTCAACATTAA 660 0.4818 MPTILLRIFLLYNVVNSFLLCLVPKKLRPFLPRSWVPHHQTNLITAATTSPSNSSSSRAVIITNRIIMDPSELKRVFEMFDRNGDGRITKKELSDSLENVGIFIPDMELTQMIEKIDANGDGCVDIDEFGQLYLSIMDEHDEEDDMMEAFNVFDQNGDGFITVDELRRVLSSMGLKQGRTVEDCKKMIMKVDVDGDGMVNFKEFKHMMKGGGFSALSQH* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1818 219 SMART efh_1 108 136 IPR002048 GO:0005509
Dod10g1818 219 SMART efh_1 72 100 IPR002048 GO:0005509
Dod10g1818 219 SMART efh_1 183 211 IPR002048 GO:0005509
Dod10g1818 219 SMART efh_1 145 173 IPR002048 GO:0005509
Dod10g1818 219 Gene3D - 53 136 - -
Dod10g1818 219 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 1 218 - -
Dod10g1818 219 Pfam EF-hand domain pair 144 209 IPR002048 GO:0005509
Dod10g1818 219 Pfam EF-hand domain pair 72 133 IPR002048 GO:0005509
Dod10g1818 219 ProSitePatterns EF-hand calcium-binding domain. 81 93 IPR018247 -
Dod10g1818 219 ProSiteProfiles EF-hand calcium-binding domain profile. 179 214 IPR002048 GO:0005509
Dod10g1818 219 SUPERFAMILY EF-hand 71 211 IPR011992 -
Dod10g1818 219 ProSitePatterns EF-hand calcium-binding domain. 192 204 IPR018247 -
Dod10g1818 219 PRINTS Flagellar calcium-binding protein (calflagin) signature 107 125 IPR003299 GO:0005509
Dod10g1818 219 PRINTS Flagellar calcium-binding protein (calflagin) signature 150 166 IPR003299 GO:0005509
Dod10g1818 219 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 218 - -
Dod10g1818 219 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Dod10g1818 219 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Dod10g1818 219 ProSiteProfiles EF-hand calcium-binding domain profile. 141 176 IPR002048 GO:0005509
Dod10g1818 219 Gene3D - 137 212 - -
Dod10g1818 219 CDD EFh 145 209 IPR002048 GO:0005509
Dod10g1818 219 ProSitePatterns EF-hand calcium-binding domain. 154 166 IPR018247 -
Dod10g1818 219 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1818 Dod-Chr10 39673058 39673717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1818 5 215 EF-hand Containing Proteins AT2G43290 64.679 1.61e-93 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1818 K13448 - gmx:100527487 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1818 10 39673058 39673717 Dod10g1818 10 39673058 39673717 ECH
Dod10g1818 10 39673058 39673717 Dod03g3036 03 63165514 63166211 PCT