Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1813 ATGTCGGTGGTTTCGTTGTTCGGTTTTGGCCGAACCAAAATGTCCAACATCATCATGTCTTCGACCACATCATCGTCGTCAACTACAACAAGAACAAGAATAAGCCTCTTCTCCTCCAAAAAGTTTGGCCTCTCTGAGGTCCAAGGACTTGCACACACAGCAGCAAATGAATTGGTTCAACGTAGTGAATCACCTGCCCAATGGGAAAAGGTGCTTGAAGGGATTCGCAAAATGAGTTGTTCTGCAGCAGCAGATGCACCACCAACACACTCTGTGGGATGTGGCAATAATGCTGATGATACTCTATCTCCTAAGGAAAGAAGATTTGCTGTCCTGGCATCTACCGTTTTATCAAGCCAAACCAAGGAGCATGTTACTCGTGGAGCAACTCAACGTCTTCGGAAGAATGGTCTGCTTACTGCTGATGCAATCAACAAAGCCGATGAAGAAACCATCAAAAAGTTGGTTTACCCTGTTGGGTTTTATACAAGAAAAGCCAGTAATTTGAAAAAGATTGCAAAGATTTGTCTAATGAAGTACGATGGAGACATACCTAGCTCAATCGAAGAACTGCTGCTACTTCCAGGCGTTGGTCCTAAGATAGCTCATTTGGTCATGATTCTTGGATGGAACAATGTCCAAGGGATATGTGTAGATTCTCATGTCCACCGCATTTGCAATCGGCTGGGATGGGTTTCAAGATCAGGCACAAAACAGAAAACTTCAACACCAGAAGAAACAAGAAAGGCATTGCAACAGTGGCTTCCGAGGGAAGAATGGGTTCCAATAAATCCTCTTCTGGTACATTTCGGTCGGACAATTTGTACTCCTATGCGGCCTCACTGTGGAGACTGCGGTATAAGTAATTTGTGCCCGTCAGCTTTCAAAGAGACTTCATCTGCCAAATCCAATAAAACTGCACCCCAGAAGAAGCTTTAA 939 0.442 MSVVSLFGFGRTKMSNIIMSSTTSSSSTTTRTRISLFSSKKFGLSEVQGLAHTAANELVQRSESPAQWEKVLEGIRKMSCSAAADAPPTHSVGCGNNADDTLSPKERRFAVLASTVLSSQTKEHVTRGATQRLRKNGLLTADAINKADEETIKKLVYPVGFYTRKASNLKKIAKICLMKYDGDIPSSIEELLLLPGVGPKIAHLVMILGWNNVQGICVDSHVHRICNRLGWVSRSGTKQKTSTPEETRKALQQWLPREEWVPINPLLVHFGRTICTPMRPHCGDCGISNLCPSAFKETSSAKSNKTAPQKKL* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1813 312 CDD ENDO3c 109 271 IPR003265 GO:0006284
Dod10g1813 312 ProSitePatterns Endonuclease III family signature. 182 211 IPR004036 -
Dod10g1813 312 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 62 303 - -
Dod10g1813 312 Pfam Helix-hairpin-helix motif 179 206 IPR000445 GO:0003677
Dod10g1813 312 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 62 303 - -
Dod10g1813 312 SMART ccc3 274 294 IPR003651 GO:0051539
Dod10g1813 312 Gene3D - 209 297 IPR023170 -
Dod10g1813 312 SUPERFAMILY DNA-glycosylase 104 298 IPR011257 GO:0003824|GO:0006281
Dod10g1813 312 Hamap Endonuclease III-like protein 1 [NTHL1]. 64 297 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Dod10g1813 312 Pfam HhH-GPD superfamily base excision DNA repair protein 114 256 IPR003265 GO:0006284
Dod10g1813 312 Gene3D Hypothetical protein; domain 2 100 208 - -
Dod10g1813 312 SMART endo3end 117 273 IPR003265 GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1813 Dod-Chr10 39594642 39599954 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1813 K10773 - gmx:100818398 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1813 10 39594642 39599954 Dod10g1813 10 39594642 39599954 ECH
Dod10g1813 10 39594642 39599954 Dod03g3027 03 63067747 63073563 PCT