Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3027 ATGTTGGTCTTTTCTGTTACTCCTTTTTGTTGGTTTGGCTTGGGGCGAATCAAAGTCTTCTTCATGTCTAACAGCGACACACCCACTTCCATTTTTGAATCCTCGGAGTCCTCGCACGGTTCCTCAGTGTCCAAAGTTCGTGTCTTTGTGAGGAGAAACAAGAGGGCCAAAACCACTGTGGCACTTCAGCCCCCAACACAGGATCACATCAAAAAGTGTGGCATGCCTGAAATTGAAGACTTTGCATACAGAGGAGCTAGTCAAATGGCTCAATGTAGGAAATTGGAAATGAGTTTAGATGCAATTCTAGTGGAAAGTGAAGTTGCTTCTCCGAGACCCAGCGGTGAATCACCTGCTCACTGGGAAAAGGTACTAGAGGGAATTCGCAAAATGAGGTGCTCTGCAGATGCACCAGTTGACACTATGGGATGTGAGAAAGCTGGTGATACTCTACCTCCTAAGGAAAGAAGATTTGCTGTCCTGGTATCTTCTCTTTTATCAAGCCAAACCAAGGATCATGTTACTCATGGAGCAATCCAACGTCTTCTCCAAAATGGCCTCCTCACACCTGATGCAATCAACAATGCCGATGAAGAAACCCTCAAAAAGATGATTTACCCTGTCGGGTTTTATACTAGAAAAGCCACAAACCTGAAGAAAATTGCAAATATCTGTCTCATGAAGTATGATGGAGACATACCTGGCTCAATTGAGCAACTACTCTTACTTCCAGGCATAGGTCCTAAGATGGCTCATTTGGTTATGAATGCTGGATGGAACGATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAATCGGCTTGGGTGGGTGTCTAGACCAGGCACAAAACAGAAAACTGCAACACCTGAAGAAACAAGAGAGGCACTGCAGAGATGGCTTCCAAAGGAAGAATGGGTTCCAATAAATCCTCTTTTGGTAGGATTTGGACAGACGATTTGCACTCCCTTAAGACCCCGTTGTGGGGAATGTGCCATAACTGACTTGTGCCCTTCAGCGTTCAAAGAGGCCTCTAACTCAAGCCCATCATCATCCAAGCCCAGAAAGTCTGGACCCAATAAGAAGCATTAG 1101 0.4532 MLVFSVTPFCWFGLGRIKVFFMSNSDTPTSIFESSESSHGSSVSKVRVFVRRNKRAKTTVALQPPTQDHIKKCGMPEIEDFAYRGASQMAQCRKLEMSLDAILVESEVASPRPSGESPAHWEKVLEGIRKMRCSADAPVDTMGCEKAGDTLPPKERRFAVLVSSLLSSQTKDHVTHGAIQRLLQNGLLTPDAINNADEETLKKMIYPVGFYTRKATNLKKIANICLMKYDGDIPGSIEQLLLLPGIGPKMAHLVMNAGWNDVQGICVDTHVHRICNRLGWVSRPGTKQKTATPEETREALQRWLPKEEWVPINPLLVGFGQTICTPLRPRCGECAITDLCPSAFKEASNSSPSSSKPRKSGPNKKH* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3027 366 Pfam Helix-hairpin-helix motif 228 256 IPR000445 GO:0003677
Dod03g3027 366 SUPERFAMILY DNA-glycosylase 129 348 IPR011257 GO:0003824|GO:0006281
Dod03g3027 366 Hamap Endonuclease III-like protein 1 [NTHL1]. 117 346 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Dod03g3027 366 Pfam HhH-GPD superfamily base excision DNA repair protein 162 304 IPR003265 GO:0006284
Dod03g3027 366 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 50 360 - -
Dod03g3027 366 SMART endo3end 166 322 IPR003265 GO:0006284
Dod03g3027 366 MobiDBLite consensus disorder prediction 344 366 - -
Dod03g3027 366 Gene3D Hypothetical protein; domain 2 151 254 - -
Dod03g3027 366 MobiDBLite consensus disorder prediction 344 358 - -
Dod03g3027 366 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 50 360 - -
Dod03g3027 366 Gene3D - 255 346 IPR023170 -
Dod03g3027 366 ProSitePatterns Endonuclease III family signature. 231 260 IPR004036 -
Dod03g3027 366 CDD ENDO3c 158 320 IPR003265 GO:0006284
Dod03g3027 366 SMART ccc3 323 343 IPR003651 GO:0051539
Dod03g3027 366 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 324 340 IPR004035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3027 Dod-Chr3 63067747 63073563 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3027 K10773 - gmx:100818398 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1813 10 39594642 39599954 Dod03g3027 03 63067747 63073563 PCT