Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1716 ATGGGTCAGGGACTGAGTTGCAGGGGCAGCCATGAACACGGCCTCTTCACCGCCGTGCAGCACGGTGACCTCCAAACCGTCACAGCCCTCTTGGAGGAAGACCCTTCTCTCATTCACCACACCACTGTCTACGATCGCCACTCGCCTCTTCATATTGCCTCTGCTAATGGCCACATCCAAATTCTATCGAGGCTTTTAGATGGATCTGTTAATCCAGATGTGTTAAATCGCCAAAAGCAGACCCCACTTATGTTGGCAGCAATGCACGGGAAGATCGACTGTGTGGAGAAGCTCCTTCAAGCTGGAGCTAATGTATTGATGTTTGATTCCTTTTATGGAAGAACCTGCTTGCACTATTCAGCATACTACGGCCATTCTTCTTGCCTTAAGGCAATTCTTTCTGCTGCTCAATCTAGTCCTGTGGCTGCTTCTTGGGGATTTGCTCGGTTTGTGAATATCAGAGATGGGAAAGGCGCAACGCCATTGCACTTGGCGGCTCGTCAAAGACGGCCTGAATGCGTACGTGTTCTGTTAGACAGTGGTGCCCTTGTTTGTGCTTCAACTGGGGGATATGGATGTCCCGGGAGCACTCCCCTTCATCTTGCAGCTAGGGGTGGATCTCTGGATTGCATTCGCGAACTGTTGGCGTGGGGTGCGGATCGTCTTCATCGCGATGCATCTGGGCGGATACCATATCTTGTTGCTCTGAAACACAGACATGGGGCATCTGCATCACTGCTAAATCCTACGTCTGCAGAGCCCCTTGTCTGGCCGTCTCCGTTGAAGTTCATCAGCGAACTTAATCCGGAAGCCAAGGCTTTATTAGAGCAGGCCTTGATGGAAGCAAACAGGGAAAGGGAGAAAAACATATTGAAGGGTAGTGCTTACTCTCTTCCATCTCCATCACATTCTGATGGGGCAGATGACGATGTCTCTGAGGAGGTTAGTGAGTCAGCATTATGCTGCATTTGCTTTGAGCAAGTATGCACAATTGAAGTCCAAAACTGTGGCCACCAGATGTGTGCACAATGCACACTAGCCCTTTGTTGCCACAACAAGCCAAACCCTGCCACTGCTTGCCTCACACCGCCAGTTTGTCCGTTCTGTCGAAGCGCCATAGCCAGACTGGTGGCCGCGAAGACAGAAACTCACAATGAAGCCGATCAAGATAGTGTCGATGTCAATAGTTCCAAGCTGAGCAAGTCAAGGAGATCAAGAAACTTGAACGACAGTGGCAGCAGCAGCTTCAAGGGGTTATCTAGTGTTGGTTCATTCGGAAAGTTGGGTAGCCGCAGCTCTGGAAGGATTGCTGCTGAGTGGATTGATAAAGAGTGA 1335 0.5026 MGQGLSCRGSHEHGLFTAVQHGDLQTVTALLEEDPSLIHHTTVYDRHSPLHIASANGHIQILSRLLDGSVNPDVLNRQKQTPLMLAAMHGKIDCVEKLLQAGANVLMFDSFYGRTCLHYSAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGKGATPLHLAARQRRPECVRVLLDSGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLHRDASGRIPYLVALKHRHGASASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMEANREREKNILKGSAYSLPSPSHSDGADDDVSEEVSESALCCICFEQVCTIEVQNCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSAIARLVAAKTETHNEADQDSVDVNSSKLSKSRRSRNLNDSGSSSFKGLSSVGSFGKLGSRSSGRIAAEWIDKE* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1716 444 SUPERFAMILY RING/U-box 313 375 - -
Dod10g1716 444 Pfam Ankyrin repeats (3 copies) 112 183 IPR002110 GO:0005515
Dod10g1716 444 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Dod10g1716 444 SUPERFAMILY Ankyrin repeat 15 250 IPR036770 -
Dod10g1716 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 417 IPR013083 -
Dod10g1716 444 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Dod10g1716 444 Gene3D - 9 144 IPR036770 -
Dod10g1716 444 PANTHER HOMEOBOX PROTEIN WARIAI 1 444 - -
Dod10g1716 444 ProSiteProfiles Zinc finger RING-type profile. 321 370 IPR001841 -
Dod10g1716 444 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Dod10g1716 444 Gene3D - 145 292 IPR036770 -
Dod10g1716 444 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Dod10g1716 444 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Dod10g1716 444 MobiDBLite consensus disorder prediction 384 405 - -
Dod10g1716 444 MobiDBLite consensus disorder prediction 384 432 - -
Dod10g1716 444 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Dod10g1716 444 MobiDBLite consensus disorder prediction 406 428 - -
Dod10g1716 444 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 444 - -
Dod10g1716 444 SMART ANK_2a 157 186 IPR002110 GO:0005515
Dod10g1716 444 SMART ANK_2a 112 142 IPR002110 GO:0005515
Dod10g1716 444 SMART ANK_2a 45 74 IPR002110 GO:0005515
Dod10g1716 444 SMART ANK_2a 194 223 IPR002110 GO:0005515
Dod10g1716 444 SMART ANK_2a 78 107 IPR002110 GO:0005515
Dod10g1716 444 SMART ANK_2a 10 40 IPR002110 GO:0005515
Dod10g1716 444 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Dod10g1716 444 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Dod10g1716 444 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Dod10g1716 444 Pfam Ankyrin repeats (many copies) 195 235 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1716 Dod-Chr10 38322222 38326185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1716 12 225 Miscellaneous Gene Families AT3G12360 32.127 4.28e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1716 - - gmx:100786708 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1716 10 38322222 38326185 Dod10g1716 10 38322222 38326185 ECH
Dod10g1716 10 38322222 38326185 Dod03g2925 03 61481331 61485256 PCT