Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1538 ATGGCGGCTGCTTTTGTCATCGCCGTGGCGCTGTTGGCGGCGGTGGCTGCCGGATCTCCGGCAACCATGACTCTGGAGAGGGCGTTTCCGACGAATCATGGAGTGGAGCTGAGTCAGCTCAGAGCACGGGACATGCTCAGGCACAGAAGAATGTTGCAGACAACAAATGGCGTCATTGATTTCCAAGTTCAAGGCACCTTCGATCCCTTCCAAGTTGGGCTTTACTATACAAAGGTGCAGTTGGGAACTCCTTCGGTTGAATTTAATGTGCAGATCGACACCGGCAGTGATGTTCTCTGGGTTAGCTGCACCTCCTGCAGTGGCTGTCCTCAGACAAGTGGGCTTCCGATTCAGCTCAATTTTTTTGACCCCAGTCATTCATCAACATCTTCGTTGATCTCTTGCTCGGACCAAAGGTGCAATAATGGAGAACAGTCATCAGATGCCACCTGTTCCAGTAAGAGCAACCAGTGCTCCTACACTTTCCAGTATGGGGATGGTAGTGGGACATCAGGCTACTATGTGTCAGATTTGATGCATTTGGACACTATTTTTGAGGGATCCGTGACTACAAATTCTTCGGCACAGGTGGTTTTTGGTTGTAGTAACCAGCAAACAGGGGACTTGACAAAATCTGATAGAGCAGTTGATGGAATATTTGGATTTGGGCAACAAAGCATGTCTGTCATCTCCCAACTCTCCTCACAAGGGATAGCTCCAGGGGTGTTCTCCCATTGTCTGAAAGGAGATAGCAGTGGTGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTTTATACTTCACTTGTTCAATCACAGCCCCATTACAATTTAAATCTGCAGAGCATCTCTGTCAATGGCCAGGCATTGCAAATTGATTCATCAGTTTTTGCAACATCAAACAACAGAGGTACCATTGTTGATTCTGGAACAACATTGGCATATCTTGCAGAAGAGGCTTATGATCCCTTTGTCAATGCAATTACAGCTGCAATTCCACAATCTGTACGTACCGTTAATTCCAGGGGAAATCAGTGTTACTTGTTGACCAGCAGTGTCGCTGACATTTTTCCTCAAGTTAGTCTGAACTTTGCTGGGGGTGCATCCATGTCTTTAAAACCACAGGACTACCTTATACAGCAGAGTTCTATTGGGGGTGCAGCAGTGTGGTGTATTGGCTTTCAGAAAATCCAGGGTCAAGAGGTAACAATTCTAGGAGACCTCGTATTAAAAGATAAAATTTTTGTTTATGATCTGGCTGGTCAACGCATTGGATGGGCTCCCTATGACTGTTCCTTGTCGGTTAATGTCTCTGCAACAACTGGCACTGGCAGAAGTGAATTTGTGAATGCTGGAGAGCTAAGTGGCAGCACTTCTTTGCGTGATGGACTTCGCAAGTTGACAAAGATAGGGTTCTTGGCTTTCTTAACACTGATTTGCTACTTAGTGCTTTTGTAG 1467 0.4615 MAAAFVIAVALLAAVAAGSPATMTLERAFPTNHGVELSQLRARDMLRHRRMLQTTNGVIDFQVQGTFDPFQVGLYYTKVQLGTPSVEFNVQIDTGSDVLWVSCTSCSGCPQTSGLPIQLNFFDPSHSSTSSLISCSDQRCNNGEQSSDATCSSKSNQCSYTFQYGDGSGTSGYYVSDLMHLDTIFEGSVTTNSSAQVVFGCSNQQTGDLTKSDRAVDGIFGFGQQSMSVISQLSSQGIAPGVFSHCLKGDSSGGGILVLGEIVEPNIVYTSLVQSQPHYNLNLQSISVNGQALQIDSSVFATSNNRGTIVDSGTTLAYLAEEAYDPFVNAITAAIPQSVRTVNSRGNQCYLLTSSVADIFPQVSLNFAGGASMSLKPQDYLIQQSSIGGAAVWCIGFQKIQGQEVTILGDLVLKDKIFVYDLAGQRIGWAPYDCSLSVNVSATTGTGRSEFVNAGELSGSTSLRDGLRKLTKIGFLAFLTLICYLVLL* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1538 488 Gene3D Acid Proteases 54 261 IPR021109 -
Dod10g1538 488 SUPERFAMILY Acid proteases 70 437 IPR021109 -
Dod10g1538 488 Pfam Xylanase inhibitor N-terminal 75 260 IPR032861 -
Dod10g1538 488 Pfam Xylanase inhibitor C-terminal 278 430 IPR032799 -
Dod10g1538 488 CDD pepsin_A_like_plant 75 434 IPR034161 -
Dod10g1538 488 ProSiteProfiles Peptidase family A1 domain profile. 75 430 IPR033121 -
Dod10g1538 488 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 3 451 - -
Dod10g1538 488 Gene3D Acid Proteases 262 441 IPR021109 -
Dod10g1538 488 PRINTS Pepsin (A1) aspartic protease family signature 308 319 IPR001461 GO:0004190|GO:0006508
Dod10g1538 488 PRINTS Pepsin (A1) aspartic protease family signature 81 101 IPR001461 GO:0004190|GO:0006508
Dod10g1538 488 PRINTS Pepsin (A1) aspartic protease family signature 406 421 IPR001461 GO:0004190|GO:0006508
Dod10g1538 488 PANTHER ASPARTYL PROTEASES 3 451 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1538 Dod-Chr10 36107056 36112383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1538 49 435 Miscellaneous Gene Families AT1G44130 25.871 8.30e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1538 - K00924 gmx:100791299 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1538 10 36107056 36112383 Dod10g1538 10 36107056 36112383 ECH
Dod10g1538 10 36107056 36112383 Dod03g2439 03 55817786 55822242 PCT