Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2439 ATGGCCGCCGCTCTTCTCTTCTCCGCCGCGCTTCTGTTGTTGGCGGCGGCGGGGGTTGTGCTGAGTTCTCCGGTGACCCTGACGCTGCAAAGAGCGTTTCCGTCGAACCACGGAATGGAGCTGAGTCAGCTCAGAGCACGGGACTCCCTCAGACATCGAAGCATGTTGCAGACCACTAGCTACGTTGTCGATTTCCCCGTTAAAGGCACCTTCGATCCCTCTCAAGTCGGGCTTTACTATACAAAGGTGAGGTTGGGTACTCCTCCAAGGGAGTTTCATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTGGTTCCTGCAATGGTTGCCCTGAGACAAGTGGTCTCCAAATTCAGCTCAATTATTTTGACCCAGGGAGCTCATCAACATCTTCATTGATCTCATGCCTGGACCAAAGGTGCAGGAATGGAGTGCAGTCTTCAGATGCCAGCTGTTCCAGTCAGAGAAACCAGTGCACCTACACATTCCAGTATGGAGATGGAAGTGGGACATCAGGGTATTACGTATCGGACTTGATGCATTTTGCCAGTATTTTTGAGGGATCTGTGACGACAAATTCTTCAACACCTATTGTTTTTGGTTGCAGCAACCTACAGACTGGGGAATTGACCAAGTCTGATAGAGCTATTGATGGAATATTTGGGTTTGGGCAGCAGGAGATGTCTGTCATCTCCCAGCTCTCGTTGCAAGGAATAGCGCCAAAAGTGTTCTCCCATTGCCTGAAGGGAGATAACAGTGGTGGTGGCATATTGGTTCTTGGTGAGATTGTGGAGCCGAACATTATTTTTAGTCCACTTGTTCCATCACAGCCTCATTATAATTTAAATCTGCAGAGCATCTCTGTCAATGGTCAAATGTTGCCAATTGATTCCTCAGTTTTTGCTACATCAAGCAACAGAGGTACCATTATAGATTCTGGAACAACTTTGGCGTACCTTGCAGAAGAGGCTTACAATCCATTTGTTGATGCGATTACATCTGCAATTCCACAATCTGTACGCACCGTTCTTTCCAAGGGAAATCAATGTTTCTTAATAACCTCCAGTGTTGCTGTCACTTTTCCTCAGGTGAGTCTGAACTTCGCTGGTGGTGCATCTCTGGTTTTAAGACCACAGGACTACCTTATTCAGCAGAATCCCATTGTTGATGGAGCAGTGTGGTGTATGGGCTTTCAGAAACTGCCGGGTCAGGGTGTAACAATTCTAGGAGACCTTGTATTAAAAGACAAGATTTTCGTCTATGATCTTGCTAATCAACGCATTGGCTGGGCTGACTATGACTGTTCATTGTCGGTTAATGTCACTGCATCAACTGGTATGGGAAGAAGTGAATTTGTCAATGCAGGAGAGCTAAGTGGCAGCACTTCTTTACGTTATGGACCTCACATGTTGATAGAAACTTGGGTCCCCTTCTTCATCATGCACATGGCACTGATATACAGCATTGTAGTTTTGTAG 1488 0.4657 MAAALLFSAALLLLAAAGVVLSSPVTLTLQRAFPSNHGMELSQLRARDSLRHRSMLQTTSYVVDFPVKGTFDPSQVGLYYTKVRLGTPPREFHVQIDTGSDVLWVSCGSCNGCPETSGLQIQLNYFDPGSSSTSSLISCLDQRCRNGVQSSDASCSSQRNQCTYTFQYGDGSGTSGYYVSDLMHFASIFEGSVTTNSSTPIVFGCSNLQTGELTKSDRAIDGIFGFGQQEMSVISQLSLQGIAPKVFSHCLKGDNSGGGILVLGEIVEPNIIFSPLVPSQPHYNLNLQSISVNGQMLPIDSSVFATSSNRGTIIDSGTTLAYLAEEAYNPFVDAITSAIPQSVRTVLSKGNQCFLITSSVAVTFPQVSLNFAGGASLVLRPQDYLIQQNPIVDGAVWCMGFQKLPGQGVTILGDLVLKDKIFVYDLANQRIGWADYDCSLSVNVTASTGMGRSEFVNAGELSGSTSLRYGPHMLIETWVPFFIMHMALIYSIVVL* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2439 495 Gene3D Acid Proteases 54 265 IPR021109 -
Dod03g2439 495 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
Dod03g2439 495 ProSiteProfiles Peptidase family A1 domain profile. 79 434 IPR033121 -
Dod03g2439 495 CDD pepsin_A_like_plant 79 438 IPR034161 -
Dod03g2439 495 Pfam Xylanase inhibitor C-terminal 282 434 IPR032799 -
Dod03g2439 495 PANTHER ASPARTYL PROTEASES 11 455 IPR001461 GO:0004190|GO:0006508
Dod03g2439 495 SUPERFAMILY Acid proteases 76 441 IPR021109 -
Dod03g2439 495 Gene3D Acid Proteases 266 446 IPR021109 -
Dod03g2439 495 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 11 455 - -
Dod03g2439 495 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Dod03g2439 495 PRINTS Pepsin (A1) aspartic protease family signature 410 425 IPR001461 GO:0004190|GO:0006508
Dod03g2439 495 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2439 Dod-Chr3 55817786 55822242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2439 53 439 Miscellaneous Gene Families AT1G44130 25.926 1.60e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2439 - K00924 gmx:100789004 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1538 10 36107056 36112383 Dod03g2439 03 55817786 55822242 PCT