Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1204 ATGGTTTCTGATGGAGTCCATGATCATGGTGAACCATCTCTTATTTACCTGATGATGAACCGGCTGAGTTCATCACATACCTGCACAGAAGCTTATGGGTTTTTGCCATGTACCACTAGTGTTCTAGGCAATGTCTTTCTTATTGTAGTCTATGGTTACTTGATGTTCTTGGCAGCCAAGTCCTTATCAGCTGGCAGTGAGATTTTGCTTCAAATTCTTGGACCTGGAATTATTGTTGGAAGGTGTGACCTTGAAAATTCAGTTGCAATAGATCAGAAAGACACGAAGGGCTTTAACTTAGCTGGATCTGGTGTAAGTACTGATATCTGGACCAGCTATGCTTCAAGGATTATGATAATATCTGTCATTCCATTTGTTATTGTACAAATACCTCAAATCATTCATGGAACTCCTCAAAGTCGTACAGCAGTTTTGGTTTCACTCATTGTCTCCATATGTTTATTGGTCATTTATACTCTTTATCAGATTTTTCAGCCAAGGATTCAGAGGAGAAGACTTGCATATGCCAAGTACAAGAACTTAATGTCAGGCTTTCTAGAACAACTAAAAACACAGACAAGGGGCCGTTTCCTCAAAGACAACGGTGAACCTCACATTGAGGTCATACAAAAGTTGTTTGAGTCACTCAAAAATTCTGAAGGGTACATAACAGCCAAAGACTTAAGAGCCCTCATAATAGGAATGCACTTTGAGGAGGAAGATATGGACATTGATGATGCTGTTGAAAGAATCATGCTGGATTTTGACGAGTCACATGACTCCAGAATTGACATGGAAGAGTTTGTGAGAGGAATAACAAGATGGCTTCAGAAAGCTACGCGTTCTGCAACACAGATGAATGGCCATAGTCCCACAACACCTAAACTTCTAAACGATTTCCATCAGAGAATGAGAGCAGAACAAGACCTGTGGAGTGATCATGGCGATGAAACCGTGGAAAGTGTCAAAAATCCAAGGTGGAACATTTTCAAAGCGGTGGTGATGTTGCTAATGGGAACTGCTGCAGCTGCTGTATTTGCTGATCCCCTTGTTGATGCTATGGACAACTTGTCAACAGCCACAAGTATTCCTTCTTTCTTTGTTTCATTTGTCATCCTTCCTTTCGCTAGCTCCAGCGAGATTGTCTCGGCTCTTACTTTTGCTAGCCGGAAAAAGATCAGAACAGCATCACTGACATATTCTGAGATATATGGATCAGTGACAATGAGCAACATCCTTTCCCTATCAGTCTTCTTGGGTCTGGTTTACATCAGGAACCTGACATGGAATTTCTCCGCTGAGGTGCTTGCTGATTCTGATTGTTTGCATAGTAATGGGCTTGGTTTCCAGCTTCCGCACTACCTTCCCTCTATGGCTGTGTTTTCCTGCCTATGCACTCTATCCTTTGTCTCTACTGTTGGTGTATATTCTTAA 1434 0.4163 MVSDGVHDHGEPSLIYLMMNRLSSSHTCTEAYGFLPCTTSVLGNVFLIVVYGYLMFLAAKSLSAGSEILLQILGPGIIVGRCDLENSVAIDQKDTKGFNLAGSGVSTDIWTSYASRIMIISVIPFVIVQIPQIIHGTPQSRTAVLVSLIVSICLLVIYTLYQIFQPRIQRRRLAYAKYKNLMSGFLEQLKTQTRGRFLKDNGEPHIEVIQKLFESLKNSEGYITAKDLRALIIGMHFEEEDMDIDDAVERIMLDFDESHDSRIDMEEFVRGITRWLQKATRSATQMNGHSPTTPKLLNDFHQRMRAEQDLWSDHGDETVESVKNPRWNIFKAVVMLLMGTAAAAVFADPLVDAMDNLSTATSIPSFFVSFVILPFASSSEIVSALTFASRKKIRTASLTYSEIYGSVTMSNILSLSVFLGLVYIRNLTWNFSAEVLADSDCLHSNGLGFQLPHYLPSMAVFSCLCTLSFVSTVGVYS* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1204 477 SUPERFAMILY EF-hand 203 276 IPR011992 -
Dod10g1204 477 Pfam Sodium/calcium exchanger protein 332 434 IPR004837 GO:0016021|GO:0055085
Dod10g1204 477 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 77 436 IPR004713 GO:0006812|GO:0008324|GO:0016021
Dod10g1204 477 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 2 80 IPR004713 GO:0006812|GO:0008324|GO:0016021
Dod10g1204 477 Gene3D - 199 300 - -
Dod10g1204 477 ProSiteProfiles EF-hand calcium-binding domain profile. 243 278 IPR002048 GO:0005509
Dod10g1204 477 CDD EFh 209 273 IPR002048 GO:0005509
Dod10g1204 477 PANTHER ION BINDING PROTEIN, PUTATIVE-RELATED 77 436 - -
Dod10g1204 477 PANTHER ION BINDING PROTEIN, PUTATIVE-RELATED 2 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1204 Dod-Chr10 31839032 31847820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1204 26 436 EF-hand Containing Proteins AT1G53210 47.890 3.27e-139 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1204 - - qsu:112040079 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1204 10 31839032 31847820 Dod10g0939 10 27291329 27295144 ECH
Dod10g1204 10 31839032 31847820 Dod10g1204 10 31839032 31847820 ECH