Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0438 ATGTCTCCAAAAAGTGTTGCCCTCTCACTTTTCATAACATTCGTCTCTTTTTGCTTATGTTTTGGGTCTTACATAGAGGAAGCACATAACCAAACAAATTATCAACGTTACTCTATCCCAAGGACGTTGTTGGAGACAAAACATGAACATTTTGGTATCATGTTAAGGGCTCATCATTCAACCCCGAGTTCAAGGTCCCAAAGAACTTTTAATGTTGATGACTATGGAGCAAAAGCTAGTGATGGAAGATATGACAATGAGGCATTTGAGAAGGCATGGAATGAGGCATGTTCAAGAGGGGGTCTTCTAGTGGTCCCTAAAAAGGGGGTCTATCATCTTAAGCCAATAACATTTTCAGGCCCATGCCAACCCAATACCGCCTTTATGAACCATGGCACAATCAAAGCATGGCCCAAAATGTCAGCCTATGAAGAAGATAGACGACTTTGGATTATGTTTGATAATGTTACGAATCTCGGAGTTAATGGTGGCGGCACTTTTAATGGCAATGGGAAAATATGGTGGGAGAACTCTTGCAAAGTTAACGAAAGCCTTGCTGTGACTTTTAGTGAATGCAACAACTTGACAGTGGCAAACCTAAGGTTCAAAAATGCACAACAAATGCACGTTAGATTTCAGAGATGCTCCAACGTTAGAGCTTCAAATCTGGTGGTCAGAGCGCCGGAGGATAGCCCTAACACTGATGGAATTCATCTCTCAGAGACACAAAATGTAATCATAAGCAACAGTGTTATTAGGACAGGTGACGACTGTATTTCAATAGTAAGTGGGTCCCAAAATGTTCGGGCCACGGATATCACTTGCGGACCAGGACATGGAATCAGTATTGGAAGCTTAGGAGCTGATAACTCAGAAGCACAAGTCTCTAATGTGGTTGTCAACAGAGCCACATTAACAGGAACGACTAATGGAGTGAGAATAAAGACATGGCAGGGGGGTTCCGGCTATGCTAAAGACATCAAATTTATGAACATAGCAATGCGAAACGTGACTAATCCCATAATCATAAATCAAAATTACTGTGATCAGAATGAGCCATGCCATGAGCAGGAATCGGCAGTGGAATTGAGTAATGTGATGTACCAAAACATCAGAGGAACGAGTGCCTCAGAAGTGGCAATCAAATTTGACTGCAGCAAGACCGTGCCCTGCAGAGCAATTCATTTGCAAGACGTTGTTTTAACACCAGAAGGCGATGGCGGCACCGTTGCTTCATGTGAGAATGTTAGATTTGCTAACAGAGGAAAGTATTTTCCTCAGTGCTTCTATTGA 1293 0.4238 MSPKSVALSLFITFVSFCLCFGSYIEEAHNQTNYQRYSIPRTLLETKHEHFGIMLRAHHSTPSSRSQRTFNVDDYGAKASDGRYDNEAFEKAWNEACSRGGLLVVPKKGVYHLKPITFSGPCQPNTAFMNHGTIKAWPKMSAYEEDRRLWIMFDNVTNLGVNGGGTFNGNGKIWWENSCKVNESLAVTFSECNNLTVANLRFKNAQQMHVRFQRCSNVRASNLVVRAPEDSPNTDGIHLSETQNVIISNSVIRTGDDCISIVSGSQNVRATDITCGPGHGISIGSLGADNSEAQVSNVVVNRATLTGTTNGVRIKTWQGGSGYAKDIKFMNIAMRNVTNPIIINQNYCDQNEPCHEQESAVELSNVMYQNIRGTSASEVAIKFDCSKTVPCRAIHLQDVVLTPEGDGGTVASCENVRFANRGKYFPQCFY* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0438 430 SUPERFAMILY Pectin lyase-like 58 429 IPR011050 -
Dod10g0438 430 Pfam Glycosyl hydrolases family 28 103 417 IPR000743 GO:0004650|GO:0005975
Dod10g0438 430 PANTHER POLYGALACTURONASE 7 429 - -
Dod10g0438 430 ProSitePatterns Polygalacturonase active site. 272 285 IPR000743 GO:0004650|GO:0005975
Dod10g0438 430 SMART pbh1 215 241 IPR006626 -
Dod10g0438 430 SMART pbh1 242 263 IPR006626 -
Dod10g0438 430 SMART pbh1 295 316 IPR006626 -
Dod10g0438 430 Gene3D - 55 426 IPR012334 -
Dod10g0438 430 PANTHER - 7 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0438 Dod-Chr10 14183427 14186851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0438 1 428 Glycoside Hydrolase AT3G07970 54.977 8.93e-159 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0438 K01184 - gmx:100796446 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2586 03 57521291 57524668 Dod10g0438 10 14183427 14186851 PCT