Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2586 ATGTCTCCACTAAGGCCAATTATCTCGCTTTTCATCATCCTTGGTTTATTAGGCTTGTGTTTTAGCTCTTCAATAGTAGAAGAACCACTTGATCAAACAAATGCTGAAGGCTACCCTGTGCATGATGAGAGGTTGATAAAGAGAAAACATGAACACTTTGGTCTAATGATGAGGGCTAATAGAGCTACCACTCGTTCTTCAAGGTCTAGTGGAACAGTTAGTGTTGATGACTTTGGAGCCAAAGCTGATGGAAGAGATGATACACAGGCATTTAAGAAGGCATGGAATGAAGCATGTTCTAGTGGGGCTACCCTTGTGGTACCTGAAAGGAGGACCTATAGTCTTAAGCCAGTATCATTTTCAGGTCCATGCCAACCCAATACTGCCTTTATGATTTATGGAACAATCAAAGCATGGCCTCAAATGTCGGCATACGAAGATGATAGACAACACTGGATTGTATTTGATAGTGTAATGAATTTCAGAGTTGATGGTGGTGGCACTTTTGATGGCAATGGGAAAAAATGGTGGCAAAATTCATGCAAAACTAATCAAAACCTTCCATGCAAAGAAGCACCAACTGCCGTGACTTTCTACCAATGCAAAAATCTGAGAGTGGCAAATTTAAGGATCAAAGATGCACAGCAAATGCACTTGACCTTTAAGAGTTGCTTCAATGTTATGGCTTCCAATCTTCTTGTTAGAGCACCAGGGTACAGCCCTAACACTGATGGAATTCATGTAGTAGAAACACAAAATATTCTCATAAGCAACAGTGTGATTGGGACAGGTGATGACTGTATTTCAATAGTAAGTGGGTCCCAAAATGTTAGAGCTACAGATATCACATGTGGACCTGGACATGGAATCAGTATTGGAAGCTTAGGAGCTGATAACTCTCAAGCTGAAGTCTCGAATGTGGTAGTGAACAGAGCCACCTTAACAGGAACAAGTAACGGAGTGAGAATAAAGACTTGGCAGGGAGGTTCTGGTTATGCAAGAAACATCAAATTTTTGAACATAGTGATGCAGAATGTGACGAATCCCATAATCATAGATCAAAACTACTGTGATCATGAACAGCCATGCCAACAGCAGCACTCAGCCGTTCAATTAAGCAATGTGTTATACCAAAACATCAGAGGAACGAGTGCCTCAGAAGTGGCCATCAATTTTGACTGCAGCAGAACCGTCCCTTGTCGAGAAATCTACCTGCAGGATGTGATTTTAGAACCAGAATATGCTGGCGATAGGGGCACCATTGCTACTTGTCAGAATGTAAGATATGTGAACCGAGGAAAGTTTTTTCCTCAATGCTCTCATTGGAGAAATTAA 1335 0.4135 MSPLRPIISLFIILGLLGLCFSSSIVEEPLDQTNAEGYPVHDERLIKRKHEHFGLMMRANRATTRSSRSSGTVSVDDFGAKADGRDDTQAFKKAWNEACSSGATLVVPERRTYSLKPVSFSGPCQPNTAFMIYGTIKAWPQMSAYEDDRQHWIVFDSVMNFRVDGGGTFDGNGKKWWQNSCKTNQNLPCKEAPTAVTFYQCKNLRVANLRIKDAQQMHLTFKSCFNVMASNLLVRAPGYSPNTDGIHVVETQNILISNSVIGTGDDCISIVSGSQNVRATDITCGPGHGISIGSLGADNSQAEVSNVVVNRATLTGTSNGVRIKTWQGGSGYARNIKFLNIVMQNVTNPIIIDQNYCDHEQPCQQQHSAVQLSNVLYQNIRGTSASEVAINFDCSRTVPCREIYLQDVILEPEYAGDRGTIATCQNVRYVNRGKFFPQCSHWRN* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2586 444 Pfam Glycosyl hydrolases family 28 103 428 IPR000743 GO:0004650|GO:0005975
Dod03g2586 444 Gene3D - 57 439 IPR012334 -
Dod03g2586 444 PANTHER POLYGALACTURONASE 7 440 - -
Dod03g2586 444 PANTHER - 7 440 - -
Dod03g2586 444 ProSitePatterns Polygalacturonase active site. 281 294 IPR000743 GO:0004650|GO:0005975
Dod03g2586 444 SUPERFAMILY Pectin lyase-like 68 441 IPR011050 -
Dod03g2586 444 SMART pbh1 224 250 IPR006626 -
Dod03g2586 444 SMART pbh1 251 272 IPR006626 -
Dod03g2586 444 SMART pbh1 304 325 IPR006626 -
Dod03g2586 444 SMART pbh1 333 354 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2586 Dod-Chr3 57521291 57524668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2586 7 440 Glycoside Hydrolase AT3G07970 55.329 9.68e-162 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2586 K01184 - gmx:732596 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2586 03 57521291 57524668 Dod10g0438 10 14183427 14186851 PCT